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Aliases for ARL11 Gene

Aliases for ARL11 Gene

  • ADP Ribosylation Factor Like GTPase 11 2 3 5
  • ADP-Ribosylation Factor-Like Tumor Suppressor Protein 1 3 4
  • ADP-Ribosylation Factor-Like Tumor Suppressor Gene 1 2 3
  • ARLTS1 3 4
  • ADP-Ribosylation Factor-Like Protein 11 3
  • ADP-Ribosylation Factor Like GTPase 11 2
  • ADP-Ribosylation Factor-Like 11 3

External Ids for ARL11 Gene

Previous GeneCards Identifiers for ARL11 Gene

  • GC13P048000
  • GC13P049100
  • GC13P050202
  • GC13P030995

Summaries for ARL11 Gene

Entrez Gene Summary for ARL11 Gene

  • This gene encodes a tumor suppressor related to the ADP-ribosylation factor (ARF) family of proteins. The encoded protein may play a role in apoptosis in a caspase-dependent manner. Polymorphisms in this gene have been associated with some familial cancers. [provided by RefSeq, May 2010]

GeneCards Summary for ARL11 Gene

ARL11 (ADP Ribosylation Factor Like GTPase 11) is a Protein Coding gene. Diseases associated with ARL11 include Ovarian Cystadenocarcinoma and Dysplastic Nevus Syndrome. Gene Ontology (GO) annotations related to this gene include GTP binding. An important paralog of this gene is ARL14.

UniProtKB/Swiss-Prot for ARL11 Gene

  • May play a role in apoptosis. May act as a tumor suppressor.

Gene Wiki entry for ARL11 Gene

Additional gene information for ARL11 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARL11 Gene

Genomics for ARL11 Gene

GeneHancer (GH) Regulatory Elements for ARL11 Gene

Promoters and enhancers for ARL11 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J049627 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE 663.1 +0.9 862 2.8 HDAC1 FOXA2 ZFP64 SIN3A ZNF335 TCF12 ZNF143 ETV6 IKZF2 REST ARL11 RCBTB1 PHF11 CAB39L LOC105370205
GH13J049442 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 10.8 -182.7 -182673 5.5 HDGF PKNOX1 CLOCK FOXA2 SMAD1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 SETDB2 CAB39L PHF11 ARL11 EBPL SNRPGP14 GC13P049390
GH13J049640 Enhancer 1.3 FANTOM5 Ensembl ENCODE 12.9 +14.3 14289 3.2 HDAC1 ZNF133 TCF12 USF2 CEBPB ZNF148 ZFP69B SMARCA4 IKZF1 STAT3 PHF11 RCBTB1 ARL11 EBPL KPNA3 SETDB2 CAB39L LOC105370205 GC13M049652
GH13J049606 Enhancer 1 Ensembl ENCODE 13.3 -21.0 -20991 1 ARID4B ZNF2 RAD21 YY1 ZNF366 ZNF143 MIXL1 SMARCA5 ZNF654 MXD4 RCBTB1 ARL11 PHF11 EBPL GC13P049617
GH13J049494 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 5.5 -130.6 -130605 6.6 HDGF PKNOX1 FOXA2 ARID4B DMAP1 ZNF2 IRF4 YY1 ZNF207 ZNF143 PHF11 SETDB2 TRIM13 KCNRG EBPL ARL11 RCBTB1 GC13P049390
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ARL11 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the ARL11 gene promoter:
  • Lmo2
  • Pax-2a
  • Pax-2
  • AML1a
  • NF-1
  • GR
  • GR-alpha
  • GR-beta
  • Max
  • c-Myc

Genomic Locations for ARL11 Gene

Genomic Locations for ARL11 Gene
chr13:49,628,299-49,633,872
(GRCh38/hg38)
Size:
5,574 bases
Orientation:
Plus strand
chr13:50,202,435-50,208,008
(GRCh37/hg19)
Size:
5,574 bases
Orientation:
Plus strand

Genomic View for ARL11 Gene

Genes around ARL11 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ARL11 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARL11 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARL11 Gene

Proteins for ARL11 Gene

  • Protein details for ARL11 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q969Q4-ARL11_HUMAN
    Recommended name:
    ADP-ribosylation factor-like protein 11
    Protein Accession:
    Q969Q4

    Protein attributes for ARL11 Gene

    Size:
    196 amino acids
    Molecular mass:
    21391 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ARL11 Gene

Post-translational modifications for ARL11 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ARL11 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ARL11 Gene

Domains & Families for ARL11 Gene

Gene Families for ARL11 Gene

HGNC:
Human Protein Atlas (HPA):
  • Disease related genes
  • Predicted intracellular proteins

Protein Domains for ARL11 Gene

Suggested Antigen Peptide Sequences for ARL11 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q969Q4

UniProtKB/Swiss-Prot:

ARL11_HUMAN :
  • Belongs to the small GTPase superfamily. Arf family.
Family:
  • Belongs to the small GTPase superfamily. Arf family.
genes like me logo Genes that share domains with ARL11: view

Function for ARL11 Gene

Molecular function for ARL11 Gene

UniProtKB/Swiss-Prot Function:
May play a role in apoptosis. May act as a tumor suppressor.

Phenotypes From GWAS Catalog for ARL11 Gene

Gene Ontology (GO) - Molecular Function for ARL11 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 16189514
GO:0005525 GTP binding IEA --
genes like me logo Genes that share ontologies with ARL11: view
genes like me logo Genes that share phenotypes with ARL11: view

Animal Model Products

Clone Products

  • Addgene plasmids for ARL11

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ARL11 Gene

Localization for ARL11 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ARL11 gene
Compartment Confidence
cytosol 3
cytoskeleton 2
mitochondrion 2
extracellular 1
peroxisome 1
endoplasmic reticulum 1

Gene Ontology (GO) - Cellular Components for ARL11 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
genes like me logo Genes that share ontologies with ARL11: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for ARL11 Gene

Pathways & Interactions for ARL11 Gene

SuperPathways for ARL11 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ARL11 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0002244 hematopoietic progenitor cell differentiation IEA --
genes like me logo Genes that share ontologies with ARL11: view

No data available for Pathways by source and SIGNOR curated interactions for ARL11 Gene

Drugs & Compounds for ARL11 Gene

No Compound Related Data Available

Transcripts for ARL11 Gene

mRNA/cDNA for ARL11 Gene

(2) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(22) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ARL11 Gene

ADP-ribosylation factor-like 11:
Representative Sequences:

Clone Products

  • Addgene plasmids for ARL11

Alternative Splicing Database (ASD) splice patterns (SP) for ARL11 Gene

No ASD Table

Relevant External Links for ARL11 Gene

GeneLoc Exon Structure for
ARL11
ECgene alternative splicing isoforms for
ARL11

Expression for ARL11 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ARL11 Gene

mRNA differential expression in normal tissues according to GTEx for ARL11 Gene

This gene is overexpressed in Whole Blood (x31.0).

Protein differential expression in normal tissues from HIPED for ARL11 Gene

This gene is overexpressed in Monocytes (39.3) and Spleen (29.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for ARL11 Gene



Protein tissue co-expression partners for ARL11 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of ARL11 Gene:

ARL11

SOURCE GeneReport for Unigene cluster for ARL11 Gene:

Hs.558599

mRNA Expression by UniProt/SwissProt for ARL11 Gene:

Q969Q4-ARL11_HUMAN
Tissue specificity: Expressed in lung and leukocytes.

Evidence on tissue expression from TISSUES for ARL11 Gene

  • Spleen(4.2)
  • Bone marrow(4.1)
  • Lung(2.3)

Phenotype-based relationships between genes and organs from Gene ORGANizer for ARL11 Gene

Germ Layers:
  • mesoderm
Systems:
  • immune
  • lymphatic
Regions:
General:
  • blood
  • bone marrow
  • white blood cell
genes like me logo Genes that share expression patterns with ARL11: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery for ARL11 Gene

Orthologs for ARL11 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for ARL11 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ARL11 34 33
  • 99.15 (n)
OneToOne
mouse
(Mus musculus)
Mammalia Arl11 16 34 33
  • 83.9 (n)
rat
(Rattus norvegicus)
Mammalia Arl11 33
  • 81.7 (n)
cow
(Bos Taurus)
Mammalia ARL11 34 33
  • 80.7 (n)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia ARL11 34
  • 68 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ARL11 34
  • 66 (a)
OneToOne
chicken
(Gallus gallus)
Aves ARL11 34 33
  • 61.88 (n)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100490310 33
  • 60.54 (n)
zebrafish
(Danio rerio)
Actinopterygii arl11 34 33
  • 56.7 (n)
OneToOne
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes ARF3 34
  • 38 (a)
OneToMany
Species where no ortholog for ARL11 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ARL11 Gene

ENSEMBL:
Gene Tree for ARL11 (if available)
TreeFam:
Gene Tree for ARL11 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for ARL11: view image

Paralogs for ARL11 Gene

(27) SIMAP similar genes for ARL11 Gene using alignment to 1 proteins:

  • ARL11_HUMAN
genes like me logo Genes that share paralogs with ARL11: view

Variants for ARL11 Gene

Sequence variations from dbSNP and Humsavar for ARL11 Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs1000262385 -- 49,628,502(+) G/T 5_prime_UTR_variant
rs1000647150 -- 49,628,732(+) C/T intron_variant
rs1000761441 -- 49,628,483(+) AGGAG/AG 5_prime_UTR_variant
rs1001383569 -- 49,627,119(+) C/G upstream_transcript_variant
rs1002677055 -- 49,626,795(+) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ARL11 Gene

Variant ID Type Subtype PubMed ID
esv3632050 CNV gain 21293372

Variation tolerance for ARL11 Gene

Residual Variation Intolerance Score: 86.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.51; 55.42% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for ARL11 Gene

Human Gene Mutation Database (HGMD)
ARL11
SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARL11

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ARL11 Gene

Disorders for ARL11 Gene

MalaCards: The human disease database

(5) MalaCards diseases for ARL11 Gene - From: HGMD, Orphanet, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
ovarian cystadenocarcinoma
  • cystadenocarcinoma of ovary
dysplastic nevus syndrome
  • familial atypical multiple mole-melanoma
chronic leukemia
  • cll
ovary adenocarcinoma
  • adenocarcinoma of the ovary
leukemia, chronic lymphocytic
  • cll
- elite association - COSMIC cancer census association via MalaCards
Search ARL11 in MalaCards View complete list of genes associated with diseases

UniProtKB/Swiss-Prot

ARL11_HUMAN
  • Leukemia, chronic lymphocytic (CLL) [MIM:151400]: A chronic leukemia in which functionally incompetent B-lymphocytes progressively accumulate in the bone marrow, blood, and lymphoid tissues. The clinical evolution of the disorder is heterogeneous, with some patients having indolent disease and others having aggressive disease and short survival. Note=Disease susceptibility is associated with variations affecting the gene represented in this entry.

Additional Disease Information for ARL11

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with ARL11: view

No data available for Genatlas for ARL11 Gene

Publications for ARL11 Gene

  1. Association of the ARLTS1 Cys148Arg variant with familial breast cancer risk. (PMID: 16353159) Frank B … Burwinkel B (International journal of cancer 2006) 3 22 44 58
  2. Familial cancer associated with a polymorphism in ARLTS1. (PMID: 15843669) Calin GA … Croce CM (The New England journal of medicine 2005) 3 4 44 58
  3. ARLTS1, MDM2 and RAD51 gene variations are associated with familial breast cancer. (PMID: 20358297) Akisik E … Dalay N (Molecular biology reports 2011) 3 44 58
  4. Association of the ARLTS1 variants with familial ovarian cancer risk in China. (PMID: 19509554) Yang XY … Peng ZL (International journal of gynecological cancer : official journal of the International Gynecological Cancer Society 2009) 3 44 58
  5. ARLTS1 - a novel tumor suppressor gene. (PMID: 18375053) Yendamuri S … Calin GA (Cancer letters 2008) 3 22 58

Products for ARL11 Gene

Sources for ARL11 Gene

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