Aliases for ARIH2OS Gene

Subcategory (RNA class) for ARIH2OS Gene

lncRNA

Aliases for ARIH2OS Gene

  • ARIH2 Opposite Strand LncRNA 2 3 5
  • Ariadne RBR E3 Ubiquitin Protein Ligase 2 Opposite Strand 2 3
  • Ariadne-2 Homolog Opposite Strand Protein 3 4
  • C3orf71 3 4
  • ARIH2OS 2 5
  • Chromosome 3 Open Reading Frame 71 2
  • Ariadne Homolog 2 Opposite Strand 2
  • Uncharacterized Protein ARIH2OS 4

External Ids for ARIH2OS Gene

Previous HGNC Symbols for ARIH2OS Gene

  • C3orf71

Summaries for ARIH2OS Gene

GeneCards Summary for ARIH2OS Gene

ARIH2OS (ARIH2 Opposite Strand LncRNA) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ARIH2OS Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ARIH2OS Gene

Genomics for ARIH2OS Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ARIH2OS Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ARIH2OS on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for ARIH2OS

Genomic Locations for ARIH2OS Gene

Genomic Locations for ARIH2OS Gene
chr3:48,917,782-48,919,385
(GRCh38/hg38)
Size:
1,604 bases
Orientation:
Minus strand
chr3:48,955,221-48,956,818
(GRCh37/hg19)
Size:
1,598 bases
Orientation:
Minus strand

Genomic View for ARIH2OS Gene

Genes around ARIH2OS on UCSC Golden Path with GeneCards custom track
ARIH2OS in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ARIH2OS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARIH2OS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARIH2OS Gene

Proteins for ARIH2OS Gene

  • Protein details for ARIH2OS Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N7S6-ARI2O_HUMAN
    Recommended name:
    Uncharacterized protein ARIH2OS
    Protein Accession:
    Q8N7S6

    Protein attributes for ARIH2OS Gene

    Size:
    290 amino acids
    Molecular mass:
    30424 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ARIH2OS Gene

Post-translational modifications for ARIH2OS Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ARIH2OS Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for ARIH2OS Gene

Domains & Families for ARIH2OS Gene

Gene Families for ARIH2OS Gene

Protein Domains for ARIH2OS Gene

ProtoNet:
genes like me logo Genes that share domains with ARIH2OS: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ARIH2OS Gene

Function for ARIH2OS Gene

Phenotypes From GWAS Catalog for ARIH2OS Gene

Phenotypes for ARIH2OS Gene

genes like me logo Genes that share phenotypes with ARIH2OS: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ARIH2OS

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ARIH2OS Gene

Localization for ARIH2OS Gene

Subcellular locations from UniProtKB/Swiss-Prot for ARIH2OS Gene

Membrane. Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ARIH2OS gene
Compartment Confidence
plasma membrane 2
extracellular 1
nucleus 1
endoplasmic reticulum 0
cytosol 0

Gene Ontology (GO) - Cellular Components for ARIH2OS Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with ARIH2OS: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for ARIH2OS Gene

Pathways & Interactions for ARIH2OS Gene

PathCards logo

SuperPathways for ARIH2OS Gene

No Data Available

Gene Ontology (GO) - Biological Process for ARIH2OS Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ARIH2OS Gene

Drugs & Compounds for ARIH2OS Gene

No Compound Related Data Available

Transcripts for ARIH2OS Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ARIH2OS Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000194B0DD_9606 lncRNA 1598 2

HGNC: 34425,

RefSeq: NR_161301,

URS0000DB8789_9606 lncRNA 1042 1

Ensembl: ENST00000647812 (view in UCSC) ,

ARIH2OS in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ARIH2OS Gene

1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ARIH2OS

Alternative Splicing Database (ASD) splice patterns (SP) for ARIH2OS Gene

No ASD Table

Relevant External Links for ARIH2OS Gene

GeneLoc Exon Structure for
ARIH2OS

Expression for ARIH2OS Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ARIH2OS Gene

mRNA expression in normal human tissues for ARIH2OS Gene

Protein differential expression in normal tissues from HIPED for ARIH2OS Gene

This gene is overexpressed in Testis (45.2) and Ovary (19.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for ARIH2OS Gene



Protein tissue co-expression partners for ARIH2OS Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ARIH2OS

SOURCE GeneReport for Unigene cluster for ARIH2OS Gene:

Hs.720727
genes like me logo Genes that share expression patterns with ARIH2OS: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ARIH2OS Gene

Orthologs for ARIH2OS Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for ARIH2OS Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia ARIH2OS 31
  • 98 (a)
OneToOne
Species where no ortholog for ARIH2OS was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for ARIH2OS Gene

ENSEMBL:
Gene Tree for ARIH2OS (if available)
TreeFam:
Gene Tree for ARIH2OS (if available)
Aminode:
Evolutionary constrained regions (ECRs) for ARIH2OS: view image

Paralogs for ARIH2OS Gene

No data available for Paralogs for ARIH2OS Gene

Variants for ARIH2OS Gene

Additional dbSNP identifiers (rs#s) for ARIH2OS Gene

Structural Variations from Database of Genomic Variants (DGV) for ARIH2OS Gene

Variant ID Type Subtype PubMed ID
esv3893694 CNV loss 25118596

Variation tolerance for ARIH2OS Gene

Residual Variation Intolerance Score: 58.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.40; 27.57% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for ARIH2OS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARIH2OS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for ARIH2OS Gene

Disorders for ARIH2OS Gene

No disorders were found for ARIH2OS Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ARIH2OS Gene

Publications for ARIH2OS Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4
  2. The DNA sequence, annotation and analysis of human chromosome 3. (PMID: 16641997) Muzny DM … Gibbs RA (Nature 2006) 4
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

Products for ARIH2OS Gene

Sources for ARIH2OS Gene