Aliases for ARID3BP1 Gene

Aliases for ARID3BP1 Gene

  • ARID3B Pseudogene 1 2 3 5
  • AT Rich Interactive Domain 3B (BRIGHT-Like) Pseudogene 3
  • AT Rich Interactive Domain 3B Pseudogene 3
  • AT-Rich Interaction Domain 3B Pseudogene 3
  • Pseudogene Similar To Dead Ringer-Like 2 3
  • ARID3BP1 5

External Ids for ARID3BP1 Gene

Summaries for ARID3BP1 Gene

GeneCards Summary for ARID3BP1 Gene

ARID3BP1 (ARID3B Pseudogene 1) is a Pseudogene.

Additional gene information for ARID3BP1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ARID3BP1 Gene

Genomics for ARID3BP1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ARID3BP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J081501 Enhancer 0.2 Ensembl 250.7 +0.2 216 0.4 5MWI_A-006 ARID3BP1 ADGRL2 lnc-ADGRL2-4
GH01J081498 Enhancer 0.5 Ensembl 0.7 -2.6 -2584 0.8 FEZF1 MAFF ZNF316 MAFK CTCF SP7 PKNOX1 ARID3BP1 HNRNPA3P14 ADGRL2 lnc-ADGRL2-4
GH01J081452 Enhancer 1.2 UCNEbase Ensembl ENCODE 0.3 -47.9 -47884 2.2 FEZF1 ZNF610 KLF7 ZNF843 PRDM6 ZBTB40 PRDM4 BCL6B TRIM28 KLF1 HNRNPA3P14 ARID3BP1 lnc-ADGRL2-4 ADGRL2
GH01J081484 Enhancer 0.6 Ensembl 0.4 -17.1 -17084 0.2 FEZF1 ZNF843 PRDM6 BATF FOXA1 FOXK2 TRIM28 PKNOX1 CTBP1 OSR2 ARID3BP1 HNRNPA3P14 ADGRL2 lnc-ADGRL2-4
GH01J081505 Enhancer 0.3 Ensembl 0.7 +3.8 3816 0.4 ZFHX2 ENSG00000227960 ARID3BP1 HSALNG0004711 ADGRL2 lnc-ADGRL2-4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ARID3BP1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ARID3BP1 Gene

Latest Assembly
chr1:81,501,585-81,505,741
(GRCh38/hg38)
Size:
4,157 bases
Orientation:
Plus strand

Previous Assembly
chr1:81,967,270-81,971,426
(GRCh37/hg19 by Entrez Gene)
Size:
4,157 bases
Orientation:
Plus strand

chr1:81,967,479-81,969,153
(GRCh37/hg19 by Ensembl)
Size:
1,675 bases
Orientation:
Plus strand

Genomic View for ARID3BP1 Gene

Genes around ARID3BP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ARID3BP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARID3BP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARID3BP1 Gene

Proteins for ARID3BP1 Gene

Post-translational modifications for ARID3BP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ARID3BP1 Gene

Domains & Families for ARID3BP1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ARID3BP1 Gene

Function for ARID3BP1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ARID3BP1 Gene

Localization for ARID3BP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ARID3BP1 Gene

Pathways & Interactions for ARID3BP1 Gene

PathCards logo

SuperPathways for ARID3BP1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ARID3BP1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ARID3BP1 Gene

Drugs & Compounds for ARID3BP1 Gene

No Compound Related Data Available

Transcripts for ARID3BP1 Gene

mRNA/cDNA for ARID3BP1 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ARID3BP1 Gene

No ASD Table

Relevant External Links for ARID3BP1 Gene

GeneLoc Exon Structure for
ARID3BP1

Expression for ARID3BP1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ARID3BP1 Gene

Orthologs for ARID3BP1 Gene

Evolution for ARID3BP1 Gene

ENSEMBL:
Gene Tree for ARID3BP1 (if available)
TreeFam:
Gene Tree for ARID3BP1 (if available)

No data available for Orthologs for ARID3BP1 Gene

Paralogs for ARID3BP1 Gene

No data available for Paralogs for ARID3BP1 Gene

Variants for ARID3BP1 Gene

Additional Variant Information for ARID3BP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARID3BP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ARID3BP1 Gene

Disorders for ARID3BP1 Gene

No disorders were found for ARID3BP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ARID3BP1 Gene

Publications for ARID3BP1 Gene

  1. Bdp, a new member of a family of DNA-binding proteins, associates with the retinoblastoma gene product. (PMID: 10446990) Numata S … Croce CM (Cancer research 1999) 3

No data available for Mastermind for ARID3BP1 Gene

Products for ARID3BP1 Gene

Sources for ARID3BP1 Gene