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Aliases for ARHGEF9-IT1 Gene

Subcategory (RNA class) for ARHGEF9-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ARHGEF9-IT1 Gene

  • ARHGEF9 Intronic Transcript 1 2 3 5
  • ARHGEF9 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for ARHGEF9-IT1 Gene

Previous GeneCards Identifiers for ARHGEF9-IT1 Gene

  • GC00U933919
  • GC0XM062891

Summaries for ARHGEF9-IT1 Gene

GeneCards Summary for ARHGEF9-IT1 Gene

ARHGEF9-IT1 (ARHGEF9 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ARHGEF9-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARHGEF9-IT1 Gene

Genomics for ARHGEF9-IT1 Gene

GeneHancer (GH) Regulatory Elements for ARHGEF9-IT1 Gene

Promoters and enhancers for ARHGEF9-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XI063751 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 0.2 -82.6 -82594 4.2 PKNOX1 ZNF76 BATF IRF4 RAD21 YY1 ZNF335 GLIS2 ZNF366 ZNF350 ARHGEF9 MIR1468 BTF3P8 ARHGEF9-IT1
GH0XI063656 Enhancer 0.5 Ensembl ENCODE 0.4 +13.6 13642 3.2 JUND ARHGEF9-IT1 LINC01278 ARHGEF9
GH0XI063761 Enhancer 0.6 ENCODE 0.2 -90.3 -90344 0.8 CTCF ZBED1 TRIM22 RAD21 ATF2 BCL11A IKZF1 ETV6 BCLAF1 RUNX3 MIR1468 ARHGEF9 BTF3P8 ARHGEF9-IT1
GH0XI063745 Enhancer 0.5 Ensembl ENCODE 0.2 -75.3 -75341 2.7 RUNX3 MIR1468 ARHGEF9 BTF3P8 ARHGEF9-IT1
GH0XI063752 Enhancer 0.2 ENCODE 0.2 -80.2 -80214 0.2 MIR1468 ARHGEF9 BTF3P8 ARHGEF9-IT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ARHGEF9-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ARHGEF9-IT1 Gene

Genomic Locations for ARHGEF9-IT1 Gene
chrX:63,670,196-63,671,502
(GRCh38/hg38)
Size:
1,307 bases
Orientation:
Minus strand
chrX:62,890,076-62,891,382
(GRCh37/hg19)

Genomic View for ARHGEF9-IT1 Gene

Genes around ARHGEF9-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ARHGEF9-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARHGEF9-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARHGEF9-IT1 Gene

Proteins for ARHGEF9-IT1 Gene

Post-translational modifications for ARHGEF9-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ARHGEF9-IT1 Gene

Domains & Families for ARHGEF9-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ARHGEF9-IT1 Gene

Function for ARHGEF9-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ARHGEF9-IT1 Gene

Localization for ARHGEF9-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ARHGEF9-IT1 Gene

Pathways & Interactions for ARHGEF9-IT1 Gene

SuperPathways for ARHGEF9-IT1 Gene

No Data Available

Interacting Proteins for ARHGEF9-IT1 Gene

Gene Ontology (GO) - Biological Process for ARHGEF9-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ARHGEF9-IT1 Gene

Drugs & Compounds for ARHGEF9-IT1 Gene

No Compound Related Data Available

Transcripts for ARHGEF9-IT1 Gene

mRNA/cDNA for ARHGEF9-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ARHGEF9-IT1 Gene

No ASD Table

Relevant External Links for ARHGEF9-IT1 Gene

GeneLoc Exon Structure for
ARHGEF9-IT1
ECgene alternative splicing isoforms for
ARHGEF9-IT1

Expression for ARHGEF9-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ARHGEF9-IT1 Gene

genes like me logo Genes that share expression patterns with ARHGEF9-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ARHGEF9-IT1 Gene

Orthologs for ARHGEF9-IT1 Gene

Evolution for ARHGEF9-IT1 Gene

ENSEMBL:
Gene Tree for ARHGEF9-IT1 (if available)
TreeFam:
Gene Tree for ARHGEF9-IT1 (if available)

No data available for Orthologs for ARHGEF9-IT1 Gene

Paralogs for ARHGEF9-IT1 Gene

No data available for Paralogs for ARHGEF9-IT1 Gene

Variants for ARHGEF9-IT1 Gene

Sequence variations from dbSNP and Humsavar for ARHGEF9-IT1 Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs112101570 -- 63,673,109(-) A/G upstream_transcript_variant
rs113034146 -- 63,670,677(-) C/G intron_variant
rs141705117 -- 63,671,545(-) G/A upstream_transcript_variant
rs146172891 -- 63,672,717(-) G/A upstream_transcript_variant
rs147412766 -- 63,670,193(-) C/A downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ARHGEF9-IT1 Gene

Variant ID Type Subtype PubMed ID
esv1584074 OTHER inversion 17803354

Additional Variant Information for ARHGEF9-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARHGEF9-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ARHGEF9-IT1 Gene

Disorders for ARHGEF9-IT1 Gene

Additional Disease Information for ARHGEF9-IT1

No disorders were found for ARHGEF9-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ARHGEF9-IT1 Gene

Publications for ARHGEF9-IT1 Gene

No publications were found for ARHGEF9-IT1 Gene.

Products for ARHGEF9-IT1 Gene

Sources for ARHGEF9-IT1 Gene

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