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Aliases for ARHGEF3-AS1 Gene

Subcategory (RNA class) for ARHGEF3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ARHGEF3-AS1 Gene

  • ARHGEF3 Antisense RNA 1 2 3 5
  • ARHGEF3 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for ARHGEF3-AS1 Gene

Previous GeneCards Identifiers for ARHGEF3-AS1 Gene

  • GC00U933751

Summaries for ARHGEF3-AS1 Gene

GeneCards Summary for ARHGEF3-AS1 Gene

ARHGEF3-AS1 (ARHGEF3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ARHGEF3-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARHGEF3-AS1 Gene

Genomics for ARHGEF3-AS1 Gene

GeneHancer (GH) Regulatory Elements for ARHGEF3-AS1 Gene

Promoters and enhancers for ARHGEF3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I056921 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -15.7 -15676 6.1 MAX PYGO2 ZNF7 POLR2A RUNX3 ZBTB20 ZNF639 RFX1 CAVIN1 ZNF740 CCDC66 FAM208A DENND6A APPL1 ARHGEF3 PDE12 GC03M056906 ARHGEF3-AS1
GH03I056915 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE dbSUPER 0.3 -22.9 -22895 4.2 HDGF PKNOX1 BMI1 BATF IRF4 ZNF207 ATF7 ETV6 BCLAF1 IKZF2 ARHGEF3 GC03M056906 ARHGEF3-AS1
GH03I056927 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -10.6 -10550 3.8 NFIB RARA SCRT2 RCOR1 USF2 CEBPB NR2F2 NFIL3 ZNF217 GLIS1 ARHGEF3-AS1 GC03M056906 ARHGEF3
GH03I056980 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.3 +41.3 41288 1.9 MXI1 JUN MAX CEBPG RAD21 FOSL1 POLR2A CBFA2T2 FOSL2 FOS SPATA12 ARHGEF3 DENND6A ARHGEF3-AS1
GH03I056976 Enhancer 1 Ensembl ENCODE dbSUPER 0.3 +37.2 37154 1.9 RFX1 ZNF140 FEZF1 ZBTB8A ZNF121 ZNF341 PRDM10 ZNF600 ZBTB17 ZBTB20 CCDC66 FAM208A DENND6A ARHGEF3-AS1 SPATA12 ARHGEF3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ARHGEF3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ARHGEF3-AS1 Gene

Genomic Locations for ARHGEF3-AS1 Gene
chr3:56,940,040-56,960,854
(GRCh38/hg38)
Size:
20,815 bases
Orientation:
Plus strand
chr3:56,974,068-56,994,882
(GRCh37/hg19)

Genomic View for ARHGEF3-AS1 Gene

Genes around ARHGEF3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ARHGEF3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARHGEF3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARHGEF3-AS1 Gene

Proteins for ARHGEF3-AS1 Gene

Post-translational modifications for ARHGEF3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ARHGEF3-AS1 Gene

Domains & Families for ARHGEF3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ARHGEF3-AS1 Gene

Function for ARHGEF3-AS1 Gene

Phenotypes From GWAS Catalog for ARHGEF3-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ARHGEF3-AS1 Gene

Localization for ARHGEF3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ARHGEF3-AS1 Gene

Pathways & Interactions for ARHGEF3-AS1 Gene

SuperPathways for ARHGEF3-AS1 Gene

No Data Available

Interacting Proteins for ARHGEF3-AS1 Gene

Gene Ontology (GO) - Biological Process for ARHGEF3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ARHGEF3-AS1 Gene

Drugs & Compounds for ARHGEF3-AS1 Gene

No Compound Related Data Available

Transcripts for ARHGEF3-AS1 Gene

mRNA/cDNA for ARHGEF3-AS1 Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ARHGEF3-AS1 Gene

ARHGEF3 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ARHGEF3-AS1 Gene

No ASD Table

Relevant External Links for ARHGEF3-AS1 Gene

GeneLoc Exon Structure for
ARHGEF3-AS1
ECgene alternative splicing isoforms for
ARHGEF3-AS1

Expression for ARHGEF3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ARHGEF3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ARHGEF3-AS1 Gene

This gene is overexpressed in Testis (x48.1) and Kidney - Cortex (x4.9).

SOURCE GeneReport for Unigene cluster for ARHGEF3-AS1 Gene:

Hs.549631
genes like me logo Genes that share expression patterns with ARHGEF3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ARHGEF3-AS1 Gene

Orthologs for ARHGEF3-AS1 Gene

Evolution for ARHGEF3-AS1 Gene

ENSEMBL:
Gene Tree for ARHGEF3-AS1 (if available)
TreeFam:
Gene Tree for ARHGEF3-AS1 (if available)

No data available for Orthologs for ARHGEF3-AS1 Gene

Paralogs for ARHGEF3-AS1 Gene

No data available for Paralogs for ARHGEF3-AS1 Gene

Variants for ARHGEF3-AS1 Gene

Sequence variations from dbSNP and Humsavar for ARHGEF3-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000036886 -- 56,944,575(+) TTTT/TTTTCTTTT intron_variant
rs1000107136 -- 56,949,734(+) C/T intron_variant
rs1000232963 -- 56,955,897(+) A/T intron_variant
rs1000241801 -- 56,945,129(+) G/A intron_variant
rs1000348468 -- 56,955,584(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ARHGEF3-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv590363 CNV loss 21841781
esv3596221 CNV loss 21293372

Additional Variant Information for ARHGEF3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARHGEF3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ARHGEF3-AS1 Gene

Disorders for ARHGEF3-AS1 Gene

Additional Disease Information for ARHGEF3-AS1

No disorders were found for ARHGEF3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ARHGEF3-AS1 Gene

Publications for ARHGEF3-AS1 Gene

No publications were found for ARHGEF3-AS1 Gene.

Products for ARHGEF3-AS1 Gene

Sources for ARHGEF3-AS1 Gene

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