Aliases for ARHGEF26-AS1 Gene

Subcategory (RNA class) for ARHGEF26-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ARHGEF26-AS1 Gene

  • ARHGEF26 Antisense RNA 1 2 3 5
  • ARHGEF26 Antisense RNA 1 (Non-Protein Coding) 2 3
  • ARHGEF26-AS1 2 168
  • NONHSAG036436 92
  • HSALNG0029955 167

External Ids for ARHGEF26-AS1 Gene

Previous GeneCards Identifiers for ARHGEF26-AS1 Gene

  • GC03M153744

Summaries for ARHGEF26-AS1 Gene

GeneCards Summary for ARHGEF26-AS1 Gene

ARHGEF26-AS1 (ARHGEF26 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ARHGEF26-AS1 include Usher Syndrome, Type I.

Additional gene information for ARHGEF26-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ARHGEF26-AS1 Gene

Genomics for ARHGEF26-AS1 Gene

GeneHancer (GH) Regulatory Elements for ARHGEF26-AS1 Gene

Promoters and enhancers for ARHGEF26-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J154120 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE CraniofacialAtlas 515.5 -1.3 -1254 4.4 ZNF217 PHF8 ZFX CLOCK ZBTB26 SAP30 RFX1 ZNF341 POLR2A OSR2 ARHGEF26 ARHGEF26-AS1 LOC105374167
GH03J154059 Enhancer 0.7 ENCODE 36.3 +60.9 60886 2 ZNF217 CTBP1 ESRRA JUND ELF1 GATA3 FOXA1 PKNOX1 DPF2 RCOR1 ARHGEF26-AS1 ARHGEF26 piR-39098-158 lnc-ARHGEF26-3
GH03J154089 Enhancer 0.8 Ensembl ENCODE 26 +31.5 31487 1.1 ZNF217 CLOCK CTBP1 ESRRA JUND USF1 GATA3 MYC PKNOX1 DPF2 piR-53063-152 piR-39098-158 piR-47162-089 ARHGEF26-AS1 ARHGEF26 lnc-ARHGEF26-3
GH03J154131 Enhancer 1.2 FANTOM5 Ensembl ENCODE 15.3 -10.7 -10747 3.4 ZSCAN5C ZNF639 ZNF10 TRIM28 ATF2 OSR2 WT1 SP2 ZBTB17 TCF7L2 ARHGEF26-AS1 ARHGEF26 LOC105374167
GH03J154223 Enhancer 0.8 Ensembl ENCODE 21.9 -103.2 -103154 1.8 ZNF217 GATAD2B CTBP1 ESRRA CEBPG POLR2A NR2F2 GATA3 NR2F1 DPF2 ARHGEF26-AS1 ARHGEF26 LOC105374167
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ARHGEF26-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ARHGEF26-AS1 Gene

Genomic Locations for ARHGEF26-AS1 Gene
chr3:154,023,007-154,121,347
(GRCh38/hg38)
Size:
98,341 bases
Orientation:
Minus strand
chr3:153,742,190-153,839,121
(GRCh37/hg19)
Size:
96,932 bases
Orientation:
Minus strand

Genomic View for ARHGEF26-AS1 Gene

Genes around ARHGEF26-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ARHGEF26-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARHGEF26-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARHGEF26-AS1 Gene

Proteins for ARHGEF26-AS1 Gene

Post-translational modifications for ARHGEF26-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ARHGEF26-AS1 Gene

Domains & Families for ARHGEF26-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ARHGEF26-AS1 Gene

Function for ARHGEF26-AS1 Gene

Phenotypes From GWAS Catalog for ARHGEF26-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ARHGEF26-AS1 Gene

Localization for ARHGEF26-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ARHGEF26-AS1 Gene

Pathways & Interactions for ARHGEF26-AS1 Gene

PathCards logo

SuperPathways for ARHGEF26-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ARHGEF26-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ARHGEF26-AS1 Gene

Drugs & Compounds for ARHGEF26-AS1 Gene

No Compound Related Data Available

Transcripts for ARHGEF26-AS1 Gene

mRNA/cDNA for ARHGEF26-AS1 Gene

31 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
16 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
13 NONCODE transcripts :
16 LncBook transcripts :
23 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for ARHGEF26-AS1 Gene

No ASD Table

Relevant External Links for ARHGEF26-AS1 Gene

GeneLoc Exon Structure for
ARHGEF26-AS1

Expression for ARHGEF26-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ARHGEF26-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ARHGEF26-AS1 Gene

This gene is overexpressed in Brain - Amygdala (x5.3) and Brain - Nucleus accumbens (basal ganglia) (x4.3).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ARHGEF26-AS1

SOURCE GeneReport for Unigene cluster for ARHGEF26-AS1 Gene:

Hs.370221
genes like me logo Genes that share expression patterns with ARHGEF26-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ARHGEF26-AS1 Gene

Orthologs for ARHGEF26-AS1 Gene

Evolution for ARHGEF26-AS1 Gene

ENSEMBL:
Gene Tree for ARHGEF26-AS1 (if available)
TreeFam:
Gene Tree for ARHGEF26-AS1 (if available)

No data available for Orthologs for ARHGEF26-AS1 Gene

Paralogs for ARHGEF26-AS1 Gene

No data available for Paralogs for ARHGEF26-AS1 Gene

Variants for ARHGEF26-AS1 Gene

Additional dbSNP identifiers (rs#s) for ARHGEF26-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for ARHGEF26-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2726080 CNV deletion 23290073
esv3598246 CNV loss 21293372
esv3598247 CNV loss 21293372
nsv478687 CNV novel sequence insertion 20440878
nsv592076 CNV loss 21841781
nsv965223 CNV duplication 23825009

Additional Variant Information for ARHGEF26-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARHGEF26-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for ARHGEF26-AS1 Gene

Disorders for ARHGEF26-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for ARHGEF26-AS1 Gene - From: DISEASES

Disorder Aliases PubMed IDs
usher syndrome, type i
  • ush1
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for ARHGEF26-AS1

genes like me logo Genes that share disorders with ARHGEF26-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ARHGEF26-AS1 Gene

Publications for ARHGEF26-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for ARHGEF26-AS1 Gene

Sources for ARHGEF26-AS1 Gene