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Aliases for ARHGAP5-AS1 Gene

Subcategory (RNA class) for ARHGAP5-AS1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for ARHGAP5-AS1 Gene

  • ARHGAP5 Antisense RNA 1 (Head To Head) 2 3 5
  • ARHGAP5 Antisense RNA 1 (Non-Protein Coding) 2 3
  • ARHGAP5 Antisense RNA 1 2 4
  • C14orf128 3 4
  • Chromosome 14 Open Reading Frame 128 2
  • ARHGAP5 Antisense Gene Protein 1 4

External Ids for ARHGAP5-AS1 Gene

ORGUL Members for ARHGAP5-AS1 Gene

Previous HGNC Symbols for ARHGAP5-AS1 Gene

  • C14orf128

Previous GeneCards Identifiers for ARHGAP5-AS1 Gene

  • GC14M032545

Summaries for ARHGAP5-AS1 Gene

GeneCards Summary for ARHGAP5-AS1 Gene

ARHGAP5-AS1 (ARHGAP5 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ARHGAP5-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARHGAP5-AS1 Gene

Genomics for ARHGAP5-AS1 Gene

GeneHancer (GH) Regulatory Elements for ARHGAP5-AS1 Gene

Promoters and enhancers for ARHGAP5-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14I032074 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 556.6 -0.4 -361 5.9 HDGF PKNOX1 CLOCK FOXA2 ARNT ARID4B NEUROD1 SIN3A FEZF1 DMAP1 ARHGAP5-AS1 ARHGAP5 RNU6-8 RNU6-7 RPL21P5 LOC101927124 GC14P032154
GH14I032082 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 -6.7 -6692 3 ELF3 FOXA2 FEZF1 DNMT3B THRB ZSCAN9 RARA SLC30A9 SMARCC2 CREM RNU6-7 RNU6-8 ARHGAP5 ARHGAP5-AS1 GC14P032154
GH14I032080 Enhancer 0.5 Ensembl dbSUPER 0.8 -3.9 -3908 0.2 ZNF24 RNU6-7 RNU6-8 ARHGAP5 ARHGAP5-AS1 GC14P032154
GH14I032087 Enhancer 0.8 ENCODE 0.4 -10.8 -10827 0.1 INSM2 KLF17 FEZF1 RAD21 RFX5 ZNF213 ZNF366 RCOR1 FOS CEBPB RNU6-7 RNU6-8 ARHGAP5 ARHGAP5-AS1 GC14P032154
GH14I032101 Enhancer 0.9 Ensembl ENCODE 0.3 -25.7 -25685 1 PKNOX1 ZNF529 PAX8 FEZF1 ZNF121 ZNF316 GATA3 ZNF213 ZSCAN5C IKZF2 ARHGAP5 RNU6-7 RNU6-8 LOC101927124 ARHGAP5-AS1 GC14P032154
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ARHGAP5-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ARHGAP5-AS1 Gene

Genomic Locations for ARHGAP5-AS1 Gene
chr14:32,074,946-32,076,793
(GRCh38/hg38)
Size:
1,848 bases
Orientation:
Minus strand
chr14:32,544,625-32,545,999
(GRCh37/hg19)

Genomic View for ARHGAP5-AS1 Gene

Genes around ARHGAP5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ARHGAP5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARHGAP5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARHGAP5-AS1 Gene

Proteins for ARHGAP5-AS1 Gene

  • Protein details for ARHGAP5-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96IT6-ARAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein ARHGAP5-AS1
    Protein Accession:
    Q96IT6
    Secondary Accessions:
    • B2RAE2
    • D3DS88

    Protein attributes for ARHGAP5-AS1 Gene

    Size:
    56 amino acids
    Molecular mass:
    6106 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ARHGAP5-AS1 Gene

Post-translational modifications for ARHGAP5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ARHGAP5-AS1 Gene

Domains & Families for ARHGAP5-AS1 Gene

Protein Domains for ARHGAP5-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ARHGAP5-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ARHGAP5-AS1 Gene

Function for ARHGAP5-AS1 Gene

Phenotypes for ARHGAP5-AS1 Gene

GenomeRNAi human phenotypes for ARHGAP5-AS1:
genes like me logo Genes that share phenotypes with ARHGAP5-AS1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ARHGAP5-AS1 Gene

Localization for ARHGAP5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ARHGAP5-AS1 Gene

Pathways & Interactions for ARHGAP5-AS1 Gene

SuperPathways for ARHGAP5-AS1 Gene

No Data Available

Interacting Proteins for ARHGAP5-AS1 Gene

Gene Ontology (GO) - Biological Process for ARHGAP5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ARHGAP5-AS1 Gene

Drugs & Compounds for ARHGAP5-AS1 Gene

No Compound Related Data Available

Transcripts for ARHGAP5-AS1 Gene

mRNA/cDNA for ARHGAP5-AS1 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ARHGAP5-AS1 Gene

ARHGAP5 antisense RNA 1 (head to head):
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ARHGAP5-AS1 Gene

No ASD Table

Relevant External Links for ARHGAP5-AS1 Gene

GeneLoc Exon Structure for
ARHGAP5-AS1
ECgene alternative splicing isoforms for
ARHGAP5-AS1

Expression for ARHGAP5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ARHGAP5-AS1 Gene

Protein differential expression in normal tissues from HIPED for ARHGAP5-AS1 Gene

This gene is overexpressed in Retina (60.0) and Testis (9.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for ARHGAP5-AS1 Gene



Protein tissue co-expression partners for ARHGAP5-AS1 Gene

- Elite partner

SOURCE GeneReport for Unigene cluster for ARHGAP5-AS1 Gene:

Hs.496755
genes like me logo Genes that share expression patterns with ARHGAP5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ARHGAP5-AS1 Gene

Orthologs for ARHGAP5-AS1 Gene

Evolution for ARHGAP5-AS1 Gene

ENSEMBL:
Gene Tree for ARHGAP5-AS1 (if available)
TreeFam:
Gene Tree for ARHGAP5-AS1 (if available)

No data available for Orthologs for ARHGAP5-AS1 Gene

Paralogs for ARHGAP5-AS1 Gene

No data available for Paralogs for ARHGAP5-AS1 Gene

Variants for ARHGAP5-AS1 Gene

Sequence variations from dbSNP and Humsavar for ARHGAP5-AS1 Gene

SNP ID Clin Chr 14 pos Variation AA Info Type
rs1000969709 -- 32,076,723(-) T/G upstream_transcript_variant
rs1001555100 -- 32,078,516(-) G/A upstream_transcript_variant
rs1002435028 -- 32,078,434(-) A/C upstream_transcript_variant
rs1003024303 -- 32,077,389(-) G/A/T upstream_transcript_variant
rs1003095056 -- 32,077,670(-) GGGGG/GGGGGG upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ARHGAP5-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1046526 CNV gain 25217958
nsv564182 CNV gain 21841781

Additional Variant Information for ARHGAP5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARHGAP5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ARHGAP5-AS1 Gene

Disorders for ARHGAP5-AS1 Gene

Additional Disease Information for ARHGAP5-AS1

No disorders were found for ARHGAP5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ARHGAP5-AS1 Gene

Publications for ARHGAP5-AS1 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  2. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh JH … Kim NS (Mammalian genome : official journal of the International Mammalian Genome Society 2005) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 4 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for ARHGAP5-AS1 Gene

Sources for ARHGAP5-AS1 Gene

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