Aliases for ARHGAP29-AS1 Gene

Subcategory (RNA class) for ARHGAP29-AS1 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for ARHGAP29-AS1 Gene

  • ARHGAP29 Antisense RNA 1 2 3
  • Novel Transcript 5
  • HSALNG0005322 169
  • NONHSAG002118 94
  • NONHSAG002117 94
  • Lnc-ABCD3-2 170
  • AC097059.1 5

External Ids for ARHGAP29-AS1 Gene

Summaries for ARHGAP29-AS1 Gene

GeneCards Summary for ARHGAP29-AS1 Gene

ARHGAP29-AS1 (ARHGAP29 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ARHGAP29-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ARHGAP29-AS1 Gene

Genomics for ARHGAP29-AS1 Gene

GeneHancer (GH) Regulatory Elements for ARHGAP29-AS1 Gene

Promoters and enhancers for ARHGAP29-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J094243 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 766.7 -0.8 -813 7.4 POLR2A L3MBTL2 ZNF280D SP7 SP5 GLIS2 ZIC2 PRDM10 LEF1 ZEB2 ARHGAP29-AS1 ABCA4 ARHGAP29 lnc-ABCA4-2
GH01J094232 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 16.5 -11.2 -11156 7.4 POLR2A ZNF362 RAD21 MNT BCL6B SP1 ZNF384 MAFK SP7 ZSCAN21 ARHGAP29 ARHGAP29-AS1 RWDD3 DNTTIP2 DR1 ABCA4 CCDC18-AS1 ABCD3 lnc-ABCA4-2
GH01J094321 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 13.9 +77.5 77526 7.3 SIN3A SREBF1 TCF7L2 ZNF362 MNT SP1 ZBTB33 MAFK PRDM1 ZNF384 ENSG00000236098 ARHGAP29-AS1 ABCD3 ABCA4 ARHGAP29 F3 LOC105378859
GH01J094296 Enhancer 1.2 Ensembl ENCODE dbSUPER 13.9 +53.1 53082 11 NR2F6 MIXL1 RAD21 ELF3 SP1 CEBPG PRDM1 PPARG SP5 ZNF644 GAPDHP29 ARHGAP29-AS1 ABCA4 SLC44A3-AS1 SLC44A3 ARHGAP29
GH01J094309 Enhancer 1.2 Ensembl ENCODE dbSUPER 13.9 +62.7 62734 2.5 NR2F6 ATF1 MIXL1 HLF RERE ELF3 SP1 PPARG HNF1A ZNF644 lnc-ABCD3-5 ARHGAP29-AS1 GAPDHP29 LOC105378859
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ARHGAP29-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ARHGAP29-AS1 Gene

Genomic Locations for ARHGAP29-AS1 Gene
chr1:94,247,819-94,411,036
(GRCh38/hg38)
Size:
163,218 bases
Orientation:
Plus strand
chr1:94,713,414-94,800,404
(GRCh37/hg19)
Size:
86,991 bases
Orientation:
Plus strand

Genomic View for ARHGAP29-AS1 Gene

Genes around ARHGAP29-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ARHGAP29-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARHGAP29-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARHGAP29-AS1 Gene

Proteins for ARHGAP29-AS1 Gene

Post-translational modifications for ARHGAP29-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ARHGAP29-AS1 Gene

Domains & Families for ARHGAP29-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ARHGAP29-AS1 Gene

Function for ARHGAP29-AS1 Gene

Phenotypes From GWAS Catalog for ARHGAP29-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ARHGAP29-AS1 Gene

Localization for ARHGAP29-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ARHGAP29-AS1 Gene

Pathways & Interactions for ARHGAP29-AS1 Gene

PathCards logo

SuperPathways for ARHGAP29-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ARHGAP29-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ARHGAP29-AS1 Gene

Drugs & Compounds for ARHGAP29-AS1 Gene

No Compound Related Data Available

Transcripts for ARHGAP29-AS1 Gene

mRNA/cDNA for ARHGAP29-AS1 Gene

(11) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(15) RNACentral transcripts :
(13) LNCipedia transcripts :
(9) NONCODE transcripts :
(11) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ARHGAP29-AS1 Gene

No ASD Table

Relevant External Links for ARHGAP29-AS1 Gene

GeneLoc Exon Structure for
ARHGAP29-AS1
ECgene alternative splicing isoforms for
ARHGAP29-AS1

Expression for ARHGAP29-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ARHGAP29-AS1 Gene

Orthologs for ARHGAP29-AS1 Gene

Evolution for ARHGAP29-AS1 Gene

ENSEMBL:
Gene Tree for ARHGAP29-AS1 (if available)
TreeFam:
Gene Tree for ARHGAP29-AS1 (if available)

No data available for Orthologs for ARHGAP29-AS1 Gene

Paralogs for ARHGAP29-AS1 Gene

No data available for Paralogs for ARHGAP29-AS1 Gene

Variants for ARHGAP29-AS1 Gene

Sequence variations from dbSNP and Humsavar for ARHGAP29-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000008018 -- 94,305,978(+) C/G/T genic_upstream_transcript_variant, intron_variant
rs1000084143 -- 94,254,718(+) T/G genic_upstream_transcript_variant, intron_variant
rs1000094539 -- 94,262,632(+) G/A genic_upstream_transcript_variant, intron_variant
rs1000101841 -- 94,300,892(+) G/A genic_upstream_transcript_variant, intron_variant
rs1000126355 -- 94,300,490(+) C/T genic_upstream_transcript_variant, intron_variant

Additional Variant Information for ARHGAP29-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARHGAP29-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ARHGAP29-AS1 Gene

Disorders for ARHGAP29-AS1 Gene

No disorders were found for ARHGAP29-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ARHGAP29-AS1 Gene

Publications for ARHGAP29-AS1 Gene

No publications were found for ARHGAP29-AS1 Gene.

No data available for External Links for ARHGAP29-AS1 Gene

Products for ARHGAP29-AS1 Gene

Sources for ARHGAP29-AS1 Gene