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Aliases for ARHGAP27P1 Gene

Aliases for ARHGAP27P1 Gene

  • Rho GTPase Activating Protein 27 Pseudogene 1 2 3
  • SH3 Domain Containing 20 Pseudogene 3

External Ids for ARHGAP27P1 Gene

Summaries for ARHGAP27P1 Gene

GeneCards Summary for ARHGAP27P1 Gene

ARHGAP27P1 (Rho GTPase Activating Protein 27 Pseudogene 1) is a Pseudogene.

Additional gene information for ARHGAP27P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARHGAP27P1 Gene

Genomics for ARHGAP27P1 Gene

GeneHancer (GH) Regulatory Elements for ARHGAP27P1 Gene

Promoters and enhancers for ARHGAP27P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J064779 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 650.7 +1.0 989 3 PKNOX1 SIN3A ZBTB7B ZBTB40 RFX5 ZNF335 GLIS2 ELK1 E2F8 EGR2 ARHGAP27P1-BPTFP1-KPNA2P3 ARHGAP27P1 MIR6080 LOC101929240 PLEKHM1P1
GH17J064775 Enhancer 1.5 FANTOM5 ENCODE dbSUPER 0.4 +5.1 5058 3.2 HDGF ARID4B SIN3A ZNF2 ZBTB7B SLC30A9 ZNF213 ZNF207 ZNF143 ZNF548 ENSG00000265982 FTSJ3 CEP95 LOC101929240 DDX5 POLG2 SMARCD2 PLEKHM1P1 SMURF2 ARHGAP27P1-BPTFP1-KPNA2P3
GH17J064773 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 +7.6 7617 1.8 HDGF PKNOX1 CLOCK ARID4B SIN3A ATF7 SP3 SP5 NFYC MXD4 FTSJ3 POLG2 SLC16A6P1 ENSG00000265982 ARHGAP27P1 ARHGAP27P1-BPTFP1-KPNA2P3 GC17M064763
GH17J064778 Enhancer 0.7 ENCODE dbSUPER 0.7 +3.0 3021 0.2 MXI1 USF1 SUZ12 MAX ZBTB33 EZH2 ENSG00000265982 MIR6080 ARHGAP27P1 ARHGAP27P1-BPTFP1-KPNA2P3
GH17J064808 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.3 -26.9 -26902 1.8 HDGF PKNOX1 FOXA2 ARID4B NEUROD1 SIN3A ZBTB7B GLIS2 ATF7 FOS ARHGAP27P1-BPTFP1-KPNA2P3 FTSJ3 POLG2 SLC16A6P1 GC17M064817 ARHGAP27P1 PLEKHM1P1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ARHGAP27P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ARHGAP27P1 Gene

Genomic Locations for ARHGAP27P1 Gene
chr17:64,749,662-64,781,999
(GRCh38/hg38)
Size:
32,338 bases
Orientation:
Minus strand

Genomic View for ARHGAP27P1 Gene

Genes around ARHGAP27P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ARHGAP27P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARHGAP27P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARHGAP27P1 Gene

Proteins for ARHGAP27P1 Gene

Post-translational modifications for ARHGAP27P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ARHGAP27P1 Gene

Domains & Families for ARHGAP27P1 Gene

Gene Families for ARHGAP27P1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ARHGAP27P1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ARHGAP27P1 Gene

Function for ARHGAP27P1 Gene

Phenotypes for ARHGAP27P1 Gene

genes like me logo Genes that share phenotypes with ARHGAP27P1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ARHGAP27P1 Gene

Localization for ARHGAP27P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ARHGAP27P1 Gene

Pathways & Interactions for ARHGAP27P1 Gene

SuperPathways for ARHGAP27P1 Gene

No Data Available

Interacting Proteins for ARHGAP27P1 Gene

Gene Ontology (GO) - Biological Process for ARHGAP27P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ARHGAP27P1 Gene

Drugs & Compounds for ARHGAP27P1 Gene

No Compound Related Data Available

Transcripts for ARHGAP27P1 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ARHGAP27P1 Gene

No ASD Table

Relevant External Links for ARHGAP27P1 Gene

GeneLoc Exon Structure for
ARHGAP27P1
ECgene alternative splicing isoforms for
ARHGAP27P1

Expression for ARHGAP27P1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ARHGAP27P1 Gene

Orthologs for ARHGAP27P1 Gene

No data available for Orthologs and Evolution for ARHGAP27P1 Gene

Paralogs for ARHGAP27P1 Gene

No data available for Paralogs for ARHGAP27P1 Gene

Variants for ARHGAP27P1 Gene

Sequence variations from dbSNP and Humsavar for ARHGAP27P1 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000028494 -- 64,778,237(-) C/T intron_variant, non_coding_transcript_variant
rs1000394049 -- 64,772,499(-) A/T genic_downstream_transcript_variant, intron_variant
rs1000451604 -- 64,761,647(-) C/A genic_downstream_transcript_variant, intron_variant
rs1000687729 -- 64,758,048(-) G/A genic_downstream_transcript_variant, intron_variant
rs1000730293 -- 64,761,389(-) C/T genic_downstream_transcript_variant, intron_variant

Additional Variant Information for ARHGAP27P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARHGAP27P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ARHGAP27P1 Gene

Disorders for ARHGAP27P1 Gene

Additional Disease Information for ARHGAP27P1

No disorders were found for ARHGAP27P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ARHGAP27P1 Gene

Publications for ARHGAP27P1 Gene

  1. PM2.5 exposure-induced autophagy is mediated by lncRNA loc146880 which also promotes the migration and invasion of lung cancer cells. (PMID: 27836757) Deng X … Qian B (Biochimica et biophysica acta 2017) 2 3 58
  2. Analysis of Microarray Data on Gene Expression and Methylation to Identify Long Non-coding RNAs in Non-small Cell Lung Cancer. (PMID: 27849024) Feng N … Qian B (Scientific reports 2016) 3 58
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for ARHGAP27P1 Gene

Sources for ARHGAP27P1 Gene

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