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Aliases for ARHGAP26-IT1 Gene

Subcategory (RNA class) for ARHGAP26-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ARHGAP26-IT1 Gene

  • ARHGAP26 Intronic Transcript 1 2 3 5
  • ARHGAP26 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for ARHGAP26-IT1 Gene

Previous GeneCards Identifiers for ARHGAP26-IT1 Gene

  • GC00U933389
  • GC05P142573

Summaries for ARHGAP26-IT1 Gene

GeneCards Summary for ARHGAP26-IT1 Gene

ARHGAP26-IT1 (ARHGAP26 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ARHGAP26-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARHGAP26-IT1 Gene

Genomics for ARHGAP26-IT1 Gene

GeneHancer (GH) Regulatory Elements for ARHGAP26-IT1 Gene

Promoters and enhancers for ARHGAP26-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I143204 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 13.1 +14.1 14074 4.8 HDGF PKNOX1 ATF1 SMAD1 IRF4 TCF12 ZNF207 ZNF143 ATF7 RUNX3 ARHGAP26-IT1 LINC01844 ARHGAP26 PIR55380
GH05I143182 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 10.6 -9.1 -9095 1.4 FOXA2 SMAD1 IRF4 YY1 ZNF143 ATF7 RUNX3 JUNB NFIL3 NBN ARHGAP26-IT1 LINC01844 NR3C1 GC05M142946 ARHGAP26
GH05I143199 Enhancer 1.3 Ensembl ENCODE dbSUPER 12.4 +8.3 8328 2.4 PKNOX1 FOXA2 MLX TCF12 ZNF766 GATA2 FOS RUNX3 NCOA1 REST ARHGAP26-IT1 PIR55380 ARHGAP26
GH05I143194 Enhancer 0.7 dbSUPER 14.2 +4.2 4237 3.5 SOX13 FOXA2 THRB RAD21 RARA GATA3 NR2F6 HOMEZ GATAD2A SOX5 ARHGAP26-IT1 PIR55380 ARHGAP26
GH05I143174 Enhancer 0.7 dbSUPER 10.2 -17.2 -17220 1.3 HDGF PKNOX1 EBF1 BATF SCRT2 ATF7 IKZF2 RUNX3 SRF SMARCA5 ARHGAP26-IT1 NR3C1 GC05M142946 ARHGAP26
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ARHGAP26-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ARHGAP26-IT1 Gene

Genomic Locations for ARHGAP26-IT1 Gene
chr5:143,192,500-143,194,166
(GRCh38/hg38)
Size:
1,667 bases
Orientation:
Plus strand
chr5:142,572,065-142,573,731
(GRCh37/hg19)

Genomic View for ARHGAP26-IT1 Gene

Genes around ARHGAP26-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ARHGAP26-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARHGAP26-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARHGAP26-IT1 Gene

Proteins for ARHGAP26-IT1 Gene

Post-translational modifications for ARHGAP26-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ARHGAP26-IT1 Gene

Domains & Families for ARHGAP26-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ARHGAP26-IT1 Gene

Function for ARHGAP26-IT1 Gene

Phenotypes From GWAS Catalog for ARHGAP26-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ARHGAP26-IT1 Gene

Localization for ARHGAP26-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ARHGAP26-IT1 Gene

Pathways & Interactions for ARHGAP26-IT1 Gene

SuperPathways for ARHGAP26-IT1 Gene

No Data Available

Interacting Proteins for ARHGAP26-IT1 Gene

Gene Ontology (GO) - Biological Process for ARHGAP26-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ARHGAP26-IT1 Gene

Drugs & Compounds for ARHGAP26-IT1 Gene

No Compound Related Data Available

Transcripts for ARHGAP26-IT1 Gene

mRNA/cDNA for ARHGAP26-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ARHGAP26-IT1 Gene

No ASD Table

Relevant External Links for ARHGAP26-IT1 Gene

GeneLoc Exon Structure for
ARHGAP26-IT1
ECgene alternative splicing isoforms for
ARHGAP26-IT1

Expression for ARHGAP26-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ARHGAP26-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for ARHGAP26-IT1 Gene

This gene is overexpressed in Testis (x38.9).
genes like me logo Genes that share expression patterns with ARHGAP26-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ARHGAP26-IT1 Gene

Orthologs for ARHGAP26-IT1 Gene

Evolution for ARHGAP26-IT1 Gene

ENSEMBL:
Gene Tree for ARHGAP26-IT1 (if available)
TreeFam:
Gene Tree for ARHGAP26-IT1 (if available)

No data available for Orthologs for ARHGAP26-IT1 Gene

Paralogs for ARHGAP26-IT1 Gene

No data available for Paralogs for ARHGAP26-IT1 Gene

Variants for ARHGAP26-IT1 Gene

Sequence variations from dbSNP and Humsavar for ARHGAP26-IT1 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000618761 -- 143,191,540(+) A/G upstream_transcript_variant
rs1000633337 -- 143,193,968(+) T/C non_coding_transcript_variant
rs1000703115 -- 143,192,285(+) G/A upstream_transcript_variant
rs1000992375 -- 143,191,703(+) C/G upstream_transcript_variant
rs1001870357 -- 143,192,778(+) T/C intron_variant

Additional Variant Information for ARHGAP26-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARHGAP26-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ARHGAP26-IT1 Gene

Disorders for ARHGAP26-IT1 Gene

Additional Disease Information for ARHGAP26-IT1

No disorders were found for ARHGAP26-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ARHGAP26-IT1 Gene

Publications for ARHGAP26-IT1 Gene

No publications were found for ARHGAP26-IT1 Gene.

Products for ARHGAP26-IT1 Gene

Sources for ARHGAP26-IT1 Gene

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