Aliases for ARHGAP22-IT1 Gene

Subcategory (RNA class) for ARHGAP22-IT1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ARHGAP22-IT1 Gene

  • ARHGAP22 Intronic Transcript 1 2 3 5
  • ARHGAP22-IT1 2 5 165
  • ARHGAP22 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • NONHSAG005850.2 91
  • HSALNG0077845 164
  • FLJ35752 2

External Ids for ARHGAP22-IT1 Gene

Previous GeneCards Identifiers for ARHGAP22-IT1 Gene

  • GC10M049719

Summaries for ARHGAP22-IT1 Gene

GeneCards Summary for ARHGAP22-IT1 Gene

ARHGAP22-IT1 (ARHGAP22 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ARHGAP22-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ARHGAP22-IT1 Gene

Genomics for ARHGAP22-IT1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ARHGAP22-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J048511 Promoter/Enhancer 0.8 Ensembl ENCODE 600.7 -0.4 -392 0.3 IKZF1 RUNX3 NR2F1 SPI1 NR2F6 ATF7 ARHGAP22-IT1 piR-42694-021 lnc-FRMPD2-5 ARHGAP22 MAPK8
GH10J048525 Enhancer 0.8 Ensembl ENCODE 4.7 -15.4 -15417 2.6 MCM7 ZNF184 FOXK2 YBX1 MCM5 ZBTB17 EHMT2 FOXM1 ZBTB5 JUND MAPK8 ARHGAP22-IT1 piR-42694-021 ENSG00000231906 lnc-FRMPD2-4 lnc-FRMPD2-5 ARHGAP22
GH10J048503 Enhancer 0.6 ENCODE dbSUPER 6.3 +7.5 7521 1.7 NFIC ATF4 EGR2 ARHGAP22-IT1 ENSG00000279822 lnc-FRMPD2-5 ARHGAP22 MAPK8
GH10J048535 Enhancer 0.7 Ensembl ENCODE 5.1 -25.1 -25123 3.2 CTCF IKZF1 USF1 TOE1 NANOG SP1 USF2 POU5F1 ARHGAP22 ARHGAP22-IT1 ENSG00000231906 lnc-FRMPD2-4 piR-42694-021 lnc-FRMPD2-5 MAPK8
GH10J048517 Enhancer 0.7 ENCODE dbSUPER 4.9 -6.5 -6483 1.3 MNT MGA FOXA1 MYC MAX L3MBTL2 SPI1 piR-42694-021 ARHGAP22 ARHGAP22-IT1 lnc-FRMPD2-4 ENSG00000231906 lnc-FRMPD2-5 MAPK8
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ARHGAP22-IT1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ARHGAP22-IT1 Gene

Genomic Locations for ARHGAP22-IT1 Gene
chr10:48,509,852-48,511,678
(GRCh38/hg38)
Size:
1,827 bases
Orientation:
Minus strand
chr10:49,718,568-49,719,632
(GRCh37/hg19)
Size:
1,065 bases
Orientation:
Minus strand

Genomic View for ARHGAP22-IT1 Gene

Genes around ARHGAP22-IT1 on UCSC Golden Path with GeneCards custom track
ARHGAP22-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ARHGAP22-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARHGAP22-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARHGAP22-IT1 Gene

Proteins for ARHGAP22-IT1 Gene

Post-translational modifications for ARHGAP22-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ARHGAP22-IT1 Gene

Domains & Families for ARHGAP22-IT1 Gene

Gene Families for ARHGAP22-IT1 Gene

genes like me logo Genes that share domains with ARHGAP22-IT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ARHGAP22-IT1 Gene

Function for ARHGAP22-IT1 Gene

Phenotypes From GWAS Catalog for ARHGAP22-IT1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ARHGAP22-IT1 Gene

Localization for ARHGAP22-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ARHGAP22-IT1 Gene

Pathways & Interactions for ARHGAP22-IT1 Gene

PathCards logo

SuperPathways for ARHGAP22-IT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ARHGAP22-IT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ARHGAP22-IT1 Gene

Drugs & Compounds for ARHGAP22-IT1 Gene

No Compound Related Data Available

Transcripts for ARHGAP22-IT1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ARHGAP22-IT1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000494DD3_9606 lncRNA 470 3

Ensembl: ENST00000505718 (view in UCSC) ,

LncBook: HSALNT0162459,

LNCipedia: ARHGAP22-IT1:3,

URS0000BC4499_9606 lncRNA 1143 2

HGNC: 42944,

RefSeq: NR_146782,

URS00008B59DF_9606 lncRNA 1091 3

LncBook: HSALNT0162457,

LNCipedia: ARHGAP22-IT1:2,

NONCODE: NONHSAT013274.2,

URS00008B8DEE_9606 lncRNA 1818 2

LNCipedia: ARHGAP22-IT1:1,

NONCODE: NONHSAT013273.2,

URS00009B5716_9606 lncRNA 470 2

LncBook: HSALNT0162458,

NONCODE: NONHSAT156988.1,

ARHGAP22-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ARHGAP22-IT1 Gene

4 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for ARHGAP22-IT1 Gene

No ASD Table

Relevant External Links for ARHGAP22-IT1 Gene

GeneLoc Exon Structure for
ARHGAP22-IT1

Expression for ARHGAP22-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ARHGAP22-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for ARHGAP22-IT1 Gene

This gene is overexpressed in Testis (x50.7).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ARHGAP22-IT1

SOURCE GeneReport for Unigene cluster for ARHGAP22-IT1 Gene:

Hs.667964
genes like me logo Genes that share expression patterns with ARHGAP22-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ARHGAP22-IT1 Gene

Orthologs for ARHGAP22-IT1 Gene

Evolution for ARHGAP22-IT1 Gene

ENSEMBL:
Gene Tree for ARHGAP22-IT1 (if available)
TreeFam:
Gene Tree for ARHGAP22-IT1 (if available)

No data available for Orthologs for ARHGAP22-IT1 Gene

Paralogs for ARHGAP22-IT1 Gene

No data available for Paralogs for ARHGAP22-IT1 Gene

Variants for ARHGAP22-IT1 Gene

Additional dbSNP identifiers (rs#s) for ARHGAP22-IT1 Gene

Additional Variant Information for ARHGAP22-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARHGAP22-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ARHGAP22-IT1 Gene

Disorders for ARHGAP22-IT1 Gene

No disorders were found for ARHGAP22-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ARHGAP22-IT1 Gene

Publications for ARHGAP22-IT1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for ARHGAP22-IT1 Gene

Sources for ARHGAP22-IT1 Gene