Aliases for ARHGAP22-IT1 Gene

Subcategory (RNA class) for ARHGAP22-IT1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for ARHGAP22-IT1 Gene

  • ARHGAP22 Intronic Transcript 1 2 3 5
  • ARHGAP22 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • ARHGAP22-IT1 2 170
  • NONHSAG005850 94
  • HSALNG0077845 169

External Ids for ARHGAP22-IT1 Gene

Previous GeneCards Identifiers for ARHGAP22-IT1 Gene

  • GC10M049719

Summaries for ARHGAP22-IT1 Gene

GeneCards Summary for ARHGAP22-IT1 Gene

ARHGAP22-IT1 (ARHGAP22 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ARHGAP22-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ARHGAP22-IT1 Gene

Genomics for ARHGAP22-IT1 Gene

GeneHancer (GH) Regulatory Elements for ARHGAP22-IT1 Gene

Promoters and enhancers for ARHGAP22-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J048511 Promoter/Enhancer 0.8 Ensembl ENCODE 750.6 -0.4 -392 0.3 IKZF1 RUNX3 NR2F1 ATF7 ARHGAP22-IT1 piR-42694-021 lnc-FRMPD2-5 ARHGAP22
GH10J048525 Enhancer 0.8 Ensembl ENCODE 4.7 -15.4 -15417 2.6 MCM5 MCM2 POLR2A MCM7 YBX1 ZNF184 EHMT2 FOXK2 ZBTB17 NCOA3 MAPK8 ARHGAP22-IT1 piR-42694-021 ENSG00000231906 lnc-FRMPD2-4 lnc-FRMPD2-5 ARHGAP22
GH10J048535 Enhancer 0.7 Ensembl ENCODE 5.1 -25.1 -25123 3.2 POU5F1 SP1 IKZF1 USF1 CTCF NANOG USF2 ARHGAP22 ARHGAP22-IT1 ENSG00000231906 lnc-FRMPD2-4 piR-42694-021 lnc-FRMPD2-5
GH10J048517 Enhancer 0.7 ENCODE dbSUPER 4.9 -6.5 -6483 1.3 MYC L3MBTL2 MAX MNT MGA FOXA1 piR-42694-021 ARHGAP22 ARHGAP22-IT1 lnc-FRMPD2-4 ENSG00000231906 lnc-FRMPD2-5
GH10J048503 Enhancer 0.4 ENCODE dbSUPER 6.3 +7.5 7521 1.7 NFIC ARHGAP22-IT1 ENSG00000279822 lnc-FRMPD2-5 ARHGAP22
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ARHGAP22-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ARHGAP22-IT1 Gene

Genomic Locations for ARHGAP22-IT1 Gene
chr10:48,509,852-48,511,678
(GRCh38/hg38)
Size:
1,827 bases
Orientation:
Minus strand
chr10:49,718,568-49,719,632
(GRCh37/hg19)
Size:
1,065 bases
Orientation:
Minus strand

Genomic View for ARHGAP22-IT1 Gene

Genes around ARHGAP22-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ARHGAP22-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARHGAP22-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARHGAP22-IT1 Gene

Proteins for ARHGAP22-IT1 Gene

Post-translational modifications for ARHGAP22-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ARHGAP22-IT1 Gene

Domains & Families for ARHGAP22-IT1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ARHGAP22-IT1 Gene

Function for ARHGAP22-IT1 Gene

Phenotypes From GWAS Catalog for ARHGAP22-IT1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ARHGAP22-IT1 Gene

Localization for ARHGAP22-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ARHGAP22-IT1 Gene

Pathways & Interactions for ARHGAP22-IT1 Gene

PathCards logo

SuperPathways for ARHGAP22-IT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ARHGAP22-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ARHGAP22-IT1 Gene

Drugs & Compounds for ARHGAP22-IT1 Gene

No Compound Related Data Available

Transcripts for ARHGAP22-IT1 Gene

mRNA/cDNA for ARHGAP22-IT1 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(5) RNACentral transcripts :
(3) LNCipedia transcripts :
(3) LncBook transcripts :
(3) NONCODE transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for ARHGAP22-IT1 Gene

No ASD Table

Relevant External Links for ARHGAP22-IT1 Gene

GeneLoc Exon Structure for
ARHGAP22-IT1
ECgene alternative splicing isoforms for
ARHGAP22-IT1

Expression for ARHGAP22-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ARHGAP22-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for ARHGAP22-IT1 Gene

This gene is overexpressed in Testis (x50.7).

SOURCE GeneReport for Unigene cluster for ARHGAP22-IT1 Gene:

Hs.667964
genes like me logo Genes that share expression patterns with ARHGAP22-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ARHGAP22-IT1 Gene

Orthologs for ARHGAP22-IT1 Gene

Evolution for ARHGAP22-IT1 Gene

ENSEMBL:
Gene Tree for ARHGAP22-IT1 (if available)
TreeFam:
Gene Tree for ARHGAP22-IT1 (if available)

No data available for Orthologs for ARHGAP22-IT1 Gene

Paralogs for ARHGAP22-IT1 Gene

No data available for Paralogs for ARHGAP22-IT1 Gene

Variants for ARHGAP22-IT1 Gene

Sequence variations from dbSNP and Humsavar for ARHGAP22-IT1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000337025 -- 48,509,748(-) G/A downstream_transcript_variant
rs1001334657 -- 48,511,248(-) T/C intron_variant
rs1001386976 -- 48,511,056(-) A/G intron_variant
rs1001554872 -- 48,511,672(-) G/A upstream_transcript_variant
rs1002269753 -- 48,513,480(-) A/G upstream_transcript_variant

Additional Variant Information for ARHGAP22-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARHGAP22-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ARHGAP22-IT1 Gene

Disorders for ARHGAP22-IT1 Gene

Additional Disease Information for ARHGAP22-IT1

No disorders were found for ARHGAP22-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ARHGAP22-IT1 Gene

Publications for ARHGAP22-IT1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56

Products for ARHGAP22-IT1 Gene

Sources for ARHGAP22-IT1 Gene