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Aliases for ARHGAP1 Gene

Aliases for ARHGAP1 Gene

  • Rho GTPase Activating Protein 1 2 3 5
  • Rho-Related Small GTPase Protein Activator 3 4
  • Rho-Type GTPase-Activating Protein 1 3 4
  • GTPase-Activating Protein RhoGAP 3 4
  • CDC42 GTPase-Activating Protein 3 4
  • CDC42GAP 3 4
  • RHOGAP1 3 4
  • GTPase-Activating Protein RhoOGAP 3
  • GTPase-Activating Protein, Rho, 1 3
  • Rho GTPase-Activating Protein 1 3
  • P50-RhoGAP 4
  • P50rhoGAP 3
  • RHOGAP 3

External Ids for ARHGAP1 Gene

Previous GeneCards Identifiers for ARHGAP1 Gene

  • GC11M048679
  • GC11M047576
  • GC11M046730
  • GC11M046662
  • GC11M046655
  • GC11M046404
  • GC11M046698
  • GC11M047080
  • GC11M047925
  • GC11M050781
  • GC11M051576
  • GC11M052238
  • GC11M052898
  • GC11M053566

Summaries for ARHGAP1 Gene

Entrez Gene Summary for ARHGAP1 Gene

  • This gene encodes a member of a large family of proteins that activate Rho-type guanosine triphosphate (GTP) metabolizing enzymes. The encoded protein contains a SRC homology 3 domain and interacts with Bcl-2-associated protein family members. [provided by RefSeq, Aug 2012]

GeneCards Summary for ARHGAP1 Gene

ARHGAP1 (Rho GTPase Activating Protein 1) is a Protein Coding gene. Diseases associated with ARHGAP1 include Noma. Among its related pathways are Actin Nucleation by ARP-WASP Complex and Regulation of CDC42 activity. Gene Ontology (GO) annotations related to this gene include GTPase activator activity and SH3/SH2 adaptor activity. An important paralog of this gene is PRR5-ARHGAP8.

UniProtKB/Swiss-Prot for ARHGAP1 Gene

  • GTPase activator for the Rho, Rac and Cdc42 proteins, converting them to the putatively inactive GDP-bound state. Cdc42 seems to be the preferred substrate.

Gene Wiki entry for ARHGAP1 Gene

Additional gene information for ARHGAP1 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARHGAP1 Gene

Genomics for ARHGAP1 Gene

GeneHancer (GH) Regulatory Elements for ARHGAP1 Gene

Promoters and enhancers for ARHGAP1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I046699 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 564.3 -0.2 -236 2.6 CLOCK MLX FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF408 ARHGAP1 ENSG00000270060 AMBRA1 DDB2 CELF1 KBTBD4 ARFGAP2 C1QTNF4 C11orf49
GH11I046693 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE dbSUPER 550.8 +4.9 4859 5.2 ELF3 PKNOX1 MLX ARID4B DNMT3B THRB ZSCAN9 RAD21 RARA SLC30A9 ARHGAP1 PIR37478 F2
GH11I046698 Enhancer 0.6 dbSUPER 550.8 +1.6 1648 1 MAZ THRB RARA GLIS2 ZFHX2 EGR1 SMAD4 EGR2 ARHGAP1 ZNF408 PIR37478
GH11I047506 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 12.1 -812.9 -812916 14.4 HDGF PKNOX1 ZFP64 ZNF213 FOS JUNB ZC3H11A REST SREBF1 SMARCA4 ENSG00000270072 NUP160 FNBP4 ENSG00000200090 ENSG00000270060 C1QTNF4 ZNF408 DDB2 AMBRA1 CELF1
GH11I047354 Enhancer 1.4 Ensembl ENCODE dbSUPER 12.1 -654.8 -654767 1.7 HDGF PKNOX1 CLOCK ARID4B NEUROD1 SIN3A DMAP1 ZNF2 ZBTB7B POLR2B NUP160 FNBP4 ENSG00000200090 C1QTNF4 ENSG00000270060 AMBRA1 RPS10P19 DDB2 ZNF408 SLC39A13
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ARHGAP1 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the ARHGAP1 gene promoter:

Genomic Locations for ARHGAP1 Gene

Genomic Locations for ARHGAP1 Gene
23,591 bases
Minus strand

Genomic View for ARHGAP1 Gene

Genes around ARHGAP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ARHGAP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARHGAP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARHGAP1 Gene

Proteins for ARHGAP1 Gene

  • Protein details for ARHGAP1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Rho GTPase-activating protein 1
    Protein Accession:
    Secondary Accessions:
    • D3DQQ6

    Protein attributes for ARHGAP1 Gene

    439 amino acids
    Molecular mass:
    50436 Da
    Quaternary structure:
    • Found in a complex with XPO7, EIF4A1, ARHGAP1, VPS26A, VPS29, VPS35 and SFN. Interacts with BNIPL.
    • Sequence=AAA16142.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for ARHGAP1 Gene

neXtProt entry for ARHGAP1 Gene

Post-translational modifications for ARHGAP1 Gene

Other Protein References for ARHGAP1 Gene

No data available for DME Specific Peptides for ARHGAP1 Gene

Domains & Families for ARHGAP1 Gene

Gene Families for ARHGAP1 Gene

Human Protein Atlas (HPA):
  • Plasma proteins
  • Predicted intracellular proteins
  • Predicted membrane proteins

Suggested Antigen Peptide Sequences for ARHGAP1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ARHGAP1: view

No data available for UniProtKB/Swiss-Prot for ARHGAP1 Gene

Function for ARHGAP1 Gene

Molecular function for ARHGAP1 Gene

GENATLAS Biochemistry:
Rho/CDC42 GTPase activating protein 1,ubiquitously expressed
UniProtKB/Swiss-Prot Function:
GTPase activator for the Rho, Rac and Cdc42 proteins, converting them to the putatively inactive GDP-bound state. Cdc42 seems to be the preferred substrate.

Phenotypes From GWAS Catalog for ARHGAP1 Gene

Gene Ontology (GO) - Molecular Function for ARHGAP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005070 SH3/SH2 adaptor activity TAS 8253717
GO:0005096 GTPase activator activity IDA,TAS --
GO:0005515 protein binding IPI 9262406
GO:0017124 SH3 domain binding IEA --
GO:0017137 Rab GTPase binding IPI 16380373
genes like me logo Genes that share ontologies with ARHGAP1: view
genes like me logo Genes that share phenotypes with ARHGAP1: view

Animal Models for ARHGAP1 Gene

MGI Knock Outs for ARHGAP1:

Animal Model Products

miRNA for ARHGAP1 Gene

miRTarBase miRNAs that target ARHGAP1

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for ARHGAP1 Gene

Localization for ARHGAP1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ARHGAP1 Gene


Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ARHGAP1 gene
Compartment Confidence
extracellular 5
cytosol 5
endosome 5
plasma membrane 2
cytoskeleton 2
nucleus 2
mitochondrion 1
golgi apparatus 1

Subcellular locations from the

Human Protein Atlas (HPA)

Gene Ontology (GO) - Cellular Components for ARHGAP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IDA,IEA 25468996
GO:0005829 cytosol TAS --
GO:0010008 endosome membrane IDA 16380373
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with ARHGAP1: view

Pathways & Interactions for ARHGAP1 Gene

genes like me logo Genes that share pathways with ARHGAP1: view

Pathways by source for ARHGAP1 Gene

Gene Ontology (GO) - Biological Process for ARHGAP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction IEA --
GO:0007264 small GTPase mediated signal transduction IDA 8253717
GO:0007266 Rho protein signal transduction TAS 8253717
GO:0009967 positive regulation of signal transduction IEA --
GO:0032439 endosome localization IMP 16380373
genes like me logo Genes that share ontologies with ARHGAP1: view

No data available for SIGNOR curated interactions for ARHGAP1 Gene

Drugs & Compounds for ARHGAP1 Gene

(4) Drugs for ARHGAP1 Gene - From: ApexBio and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
HJC 0350 Pharma 0

(3) Additional Compounds for ARHGAP1 Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs

(1) ApexBio Compounds for ARHGAP1 Gene

Compound Action Cas Number
HJC 0350 885434-70-8
genes like me logo Genes that share compounds with ARHGAP1: view

Drug Products

Transcripts for ARHGAP1 Gene

Unigene Clusters for ARHGAP1 Gene

Rho GTPase activating protein 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ARHGAP1 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3a · 3b · 3c ^ 4a · 4b · 4c ^ 5a · 5b · 5c · 5d ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12a · 12b ^ 13 ^ 14a ·
SP1: - - - - - - - - - -
SP3: - - - - -
SP4: - - - - - - -
SP5: - - - - - -
SP6: - - - - - -
SP7: - - - -
SP8: - - - -

ExUns: 14b

Relevant External Links for ARHGAP1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for ARHGAP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ARHGAP1 Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for ARHGAP1 Gene

Protein tissue co-expression partners for ARHGAP1 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of ARHGAP1 Gene:


SOURCE GeneReport for Unigene cluster for ARHGAP1 Gene:


mRNA Expression by UniProt/SwissProt for ARHGAP1 Gene:

Tissue specificity: Ubiquitous.

Evidence on tissue expression from TISSUES for ARHGAP1 Gene

  • Pancreas(4.5)
  • Blood(4.4)
  • Liver(4.4)
  • Spleen(4.3)
  • Nervous system(3.7)
  • Kidney(2.4)
  • Heart(2.3)
  • Muscle(2.3)
genes like me logo Genes that share expression patterns with ARHGAP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues and Phenotype-based relationships between genes and organs from Gene ORGANizer for ARHGAP1 Gene

Orthologs for ARHGAP1 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for ARHGAP1 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia ARHGAP1 33 34
  • 99.7 (n)
(Canis familiaris)
Mammalia ARHGAP1 33 34
  • 91.19 (n)
(Bos Taurus)
Mammalia ARHGAP1 33 34
  • 89.9 (n)
(Mus musculus)
Mammalia Arhgap1 33 16 34
  • 89.37 (n)
(Monodelphis domestica)
Mammalia ARHGAP1 34
  • 89 (a)
(Rattus norvegicus)
Mammalia Arhgap1 33
  • 87.7 (n)
(Ornithorhynchus anatinus)
Mammalia ARHGAP1 34
  • 71 (a)
(Gallus gallus)
Aves ARHGAP1 33
  • 76.46 (n)
(Anolis carolinensis)
Reptilia ARHGAP1 34
  • 77 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia arhgap1 33
  • 73.84 (n)
(Danio rerio)
Actinopterygii arhgap1 33 34
  • 63.78 (n)
fruit fly
(Drosophila melanogaster)
Insecta RhoGAP68F 35 33 34
  • 54.31 (n)
(Caenorhabditis elegans)
Secernentea rga-1 33 34
  • 50.32 (n)
W02B12.8 35
  • 39 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 42 (a)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes SPAC1565.02c 33
  • 40.04 (n)
Species where no ortholog for ARHGAP1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for ARHGAP1 Gene

Gene Tree for ARHGAP1 (if available)
Gene Tree for ARHGAP1 (if available)

Paralogs for ARHGAP1 Gene

(14) SIMAP similar genes for ARHGAP1 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with ARHGAP1: view

Variants for ARHGAP1 Gene

Sequence variations from dbSNP and Humsavar for ARHGAP1 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs796065313 uncertain-significance, Exudative vitreoretinopathy 1 46,700,832(-) TCGAATC/TC upstream_transcript_variant
rs796065314 uncertain-significance, Exudative vitreoretinopathy 1 46,700,937(-) C/A upstream_transcript_variant
rs796065315 uncertain-significance, Exudative vitreoretinopathy 1 46,701,476(-) C/T upstream_transcript_variant
rs1000133654 -- 46,691,698(-) C/T intron_variant
rs1000254810 -- 46,691,373(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ARHGAP1 Gene

Variant ID Type Subtype PubMed ID
esv3626192 CNV loss 21293372
esv3626191 CNV gain 21293372

Variation tolerance for ARHGAP1 Gene

Residual Variation Intolerance Score: 46.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.92; 35.79% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for ARHGAP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ARHGAP1 Gene

Disorders for ARHGAP1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for ARHGAP1 Gene - From: GeneCards

Disorder Aliases PubMed IDs
  • cancrum oris
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for ARHGAP1

Genetic Association Database
Human Genome Epidemiology Navigator
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with ARHGAP1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ARHGAP1 Gene

Publications for ARHGAP1 Gene

  1. Characterization of rhoGAP. A GTPase-activating protein for rho-related small GTPases. (PMID: 8288572) Lancaster CA … Hall A (The Journal of biological chemistry 1994) 2 3 4 22 58
  2. BNIPL-2, a novel homologue of BNIP-2, interacts with Bcl-2 and Cdc42GAP in apoptosis. (PMID: 12901880) Qin W … Gu J (Biochemical and biophysical research communications 2003) 3 4 22 58
  3. The structure of the GTPase-activating domain from p50rhoGAP. (PMID: 9009196) Barrett T … Eccleston JF (Nature 1997) 3 4 22 58
  4. Mutation of ARHGAP9 in patients with coronary spastic angina. (PMID: 19911011) Takefuji M … Kaibuchi K (Journal of human genetics 2010) 3 44 58
  5. Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies. (PMID: 19801982) Rivadeneira F … Genetic Factors for Osteoporosis (GEFOS) Consortium (Nature genetics 2009) 3 44 58

Products for ARHGAP1 Gene

Sources for ARHGAP1 Gene

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