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Aliases for ARGFXP1 Gene

Aliases for ARGFXP1 Gene

  • Arginine-Fifty Homeobox Pseudogene 1 2 3

External Ids for ARGFXP1 Gene

Previous GeneCards Identifiers for ARGFXP1 Gene

  • GC05U900536
  • GC05P122039
  • GC05P117199
  • GC05P122012

Summaries for ARGFXP1 Gene

Entrez Gene Summary for ARGFXP1 Gene

  • Homeobox genes encode DNA-binding proteins, many of which are thought to be involved in early embryonic development. Homeobox genes encode a DNA-binding domain of 60 to 63 amino acids referred to as the homeodomain. This pseudogene is a member of the ARGFX homeobox gene family. [provided by RefSeq, Jul 2008]

GeneCards Summary for ARGFXP1 Gene

ARGFXP1 (Arginine-Fifty Homeobox Pseudogene 1) is a Pseudogene.

Additional gene information for ARGFXP1 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARGFXP1 Gene

Genomics for ARGFXP1 Gene

GeneHancer (GH) Regulatory Elements for ARGFXP1 Gene

Promoters and enhancers for ARGFXP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I122696 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.3 +21.4 21361 1 ZNF493 ZNF529 ZFP64 MZF1 ZNF121 ZNF213 ZNF354C ZNF138 KLF7 ZNF214 CEP120 CSNK1G3 SNX2 ENSG00000260686 ZNF474 KRT8P33 SRFBP1 LOX SNCAIP RN7SL689P
GH05I122701 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 0.3 +26.6 26573 1.9 HDGF PKNOX1 EBF1 BATF IRF4 RELA POLR2A NFATC1 ATF7 ETV6 SNX2 PRDM6 RN7SL689P ENSG00000260686 SNX24 GC05M122721 ARGFXP1 LINC02201
GH05I122704 Enhancer 0.8 ENCODE dbSUPER 0.3 +29.4 29427 0.5 CTCF MAFG ZNF316 MAFF NFE2 EMSY MAFK NFE2L2 ENSG00000260686 GC05M122721 ARGFXP1 LINC02201
GH05I122698 Enhancer 0.6 FANTOM5 dbSUPER 0.3 +23.2 23181 0.3 GATA3 ZNF316 SNX2 PRDM6 ARGFXP1 GC05M122721 LINC02201
GH05I122721 Enhancer 0.9 Ensembl ENCODE 0.2 +47.2 47237 2.5 EBF1 BATF IRF4 GATA3 ZSCAN5C ATF7 ETV6 BCLAF1 IKZF2 RUNX3 GC05M122721 LINC02201 RN7SL689P PRDM6 ARGFXP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ARGFXP1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ARGFXP1 Gene

Genomic Locations for ARGFXP1 Gene
chr5:122,675,700-122,680,538
(GRCh38/hg38)
Size:
4,839 bases
Orientation:
Plus strand
chr5:122,011,396-122,016,260
(GRCh37/hg19)

Genomic View for ARGFXP1 Gene

Genes around ARGFXP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ARGFXP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARGFXP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARGFXP1 Gene

Proteins for ARGFXP1 Gene

Post-translational modifications for ARGFXP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ARGFXP1 Gene

Domains & Families for ARGFXP1 Gene

Gene Families for ARGFXP1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ARGFXP1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ARGFXP1 Gene

Function for ARGFXP1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ARGFXP1 Gene

Localization for ARGFXP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ARGFXP1 Gene

Pathways & Interactions for ARGFXP1 Gene

SuperPathways for ARGFXP1 Gene

No Data Available

Interacting Proteins for ARGFXP1 Gene

Gene Ontology (GO) - Biological Process for ARGFXP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ARGFXP1 Gene

Drugs & Compounds for ARGFXP1 Gene

No Compound Related Data Available

Transcripts for ARGFXP1 Gene

mRNA/cDNA for ARGFXP1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ARGFXP1 Gene

No ASD Table

Relevant External Links for ARGFXP1 Gene

GeneLoc Exon Structure for
ARGFXP1
ECgene alternative splicing isoforms for
ARGFXP1

Expression for ARGFXP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ARGFXP1 Gene

mRNA differential expression in normal tissues according to GTEx for ARGFXP1 Gene

This gene is overexpressed in Fallopian Tube (x15.5), Nerve - Tibial (x10.2), and Ovary (x8.7).

NURSA nuclear receptor signaling pathways regulating expression of ARGFXP1 Gene:

ARGFXP1
genes like me logo Genes that share expression patterns with ARGFXP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ARGFXP1 Gene

Orthologs for ARGFXP1 Gene

Evolution for ARGFXP1 Gene

ENSEMBL:
Gene Tree for ARGFXP1 (if available)
TreeFam:
Gene Tree for ARGFXP1 (if available)

No data available for Orthologs for ARGFXP1 Gene

Paralogs for ARGFXP1 Gene

No data available for Paralogs for ARGFXP1 Gene

Variants for ARGFXP1 Gene

Additional Variant Information for ARGFXP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARGFXP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ARGFXP1 Gene

Disorders for ARGFXP1 Gene

No disorders were found for ARGFXP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ARGFXP1 Gene

Publications for ARGFXP1 Gene

  1. Annotation, nomenclature and evolution of four novel homeobox genes expressed in the human germ line. (PMID: 17005330) Booth HA … Holland PW (Gene 2007) 3 58

Products for ARGFXP1 Gene

Sources for ARGFXP1 Gene

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