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Aliases for ARGFXP1 Gene

Aliases for ARGFXP1 Gene

  • Arginine-Fifty Homeobox Pseudogene 1 2 3 5

External Ids for ARGFXP1 Gene

Previous GeneCards Identifiers for ARGFXP1 Gene

  • GC05U900536
  • GC05P122039
  • GC05P117199
  • GC05P122012

Summaries for ARGFXP1 Gene

Entrez Gene Summary for ARGFXP1 Gene

  • Homeobox genes encode DNA-binding proteins, many of which are thought to be involved in early embryonic development. Homeobox genes encode a DNA-binding domain of 60 to 63 amino acids referred to as the homeodomain. This pseudogene is a member of the ARGFX homeobox gene family. [provided by RefSeq, Jul 2008]

GeneCards Summary for ARGFXP1 Gene

ARGFXP1 (Arginine-Fifty Homeobox Pseudogene 1) is a Pseudogene.

Additional gene information for ARGFXP1 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ARGFXP1 Gene

Genomics for ARGFXP1 Gene

GeneHancer (GH) Regulatory Elements for ARGFXP1 Gene

Promoters and enhancers for ARGFXP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J122674 Enhancer 0.2 Ensembl 600.7 -1.6 -1599 0.2 ARGFXP1 LINC02201 GC05M122572 GC05P122531
GH05J122701 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +26.6 26573 1.9 ZNF687 RELA CREM IKZF1 POLR2A IKZF2 PKNOX1 CBFB DPF2 RUNX3 SNX2 PRDM6 RN7SL689P ENSG00000260686 SNX24 GC05M122721 ARGFXP1 LINC02201
GH05J122696 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +20.5 20526 5.6 ZNF121 MAFK ZNF404 MZF1 ZNF680 ZNF560 ZNF704 ZNF547 ZBTB8A PRDM12 CEP120 SNX2 CSNK1G3 ENSG00000260686 SRFBP1 KRT8P33 LOX ZNF474 PRDM6 SNX24
GH05J122653 Enhancer 0.7 Ensembl 0.3 -22.4 -22399 0.2 PRDM10 ZEB2 ZBTB44 ZBTB20 ZXDB ZSCAN5C OSR2 ZNF580 ZBTB17 ZNF189 ARGFXP1 GC05M122572 LINC02201 GC05P122531
GH05J122704 Enhancer 0.8 ENCODE dbSUPER 0.3 +29.4 29427 0.5 MAFK CTCF ZNF316 NFE2 MAFG MAFF NFE2L2 EMSY ENSG00000260686 GC05M122721 LINC02201 ARGFXP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ARGFXP1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ARGFXP1 Gene

Genomic Locations for ARGFXP1 Gene
chr5:122,675,700-122,680,538
(GRCh38/hg38)
Size:
4,839 bases
Orientation:
Plus strand
chr5:122,011,396-122,016,260
(GRCh37/hg19)
Size:
4,865 bases
Orientation:
Plus strand

Genomic View for ARGFXP1 Gene

Genes around ARGFXP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ARGFXP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARGFXP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARGFXP1 Gene

Proteins for ARGFXP1 Gene

Post-translational modifications for ARGFXP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ARGFXP1 Gene

Domains & Families for ARGFXP1 Gene

Gene Families for ARGFXP1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ARGFXP1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ARGFXP1 Gene

Function for ARGFXP1 Gene

Phenotypes From GWAS Catalog for ARGFXP1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ARGFXP1 Gene

Localization for ARGFXP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ARGFXP1 Gene

Pathways & Interactions for ARGFXP1 Gene

PathCards logo

SuperPathways for ARGFXP1 Gene

No Data Available

Interacting Proteins for ARGFXP1 Gene

Gene Ontology (GO) - Biological Process for ARGFXP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ARGFXP1 Gene

Drugs & Compounds for ARGFXP1 Gene

No Compound Related Data Available

Transcripts for ARGFXP1 Gene

mRNA/cDNA for ARGFXP1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for ARGFXP1 Gene

No ASD Table

Relevant External Links for ARGFXP1 Gene

GeneLoc Exon Structure for
ARGFXP1
ECgene alternative splicing isoforms for
ARGFXP1

Expression for ARGFXP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ARGFXP1 Gene

mRNA differential expression in normal tissues according to GTEx for ARGFXP1 Gene

This gene is overexpressed in Fallopian Tube (x15.5), Nerve - Tibial (x10.2), and Ovary (x8.7).

NURSA nuclear receptor signaling pathways regulating expression of ARGFXP1 Gene:

ARGFXP1
genes like me logo Genes that share expression patterns with ARGFXP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ARGFXP1 Gene

Orthologs for ARGFXP1 Gene

Evolution for ARGFXP1 Gene

ENSEMBL:
Gene Tree for ARGFXP1 (if available)
TreeFam:
Gene Tree for ARGFXP1 (if available)

No data available for Orthologs for ARGFXP1 Gene

Paralogs for ARGFXP1 Gene

No data available for Paralogs for ARGFXP1 Gene

Variants for ARGFXP1 Gene

Additional Variant Information for ARGFXP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARGFXP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ARGFXP1 Gene

Disorders for ARGFXP1 Gene

No disorders were found for ARGFXP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ARGFXP1 Gene

Publications for ARGFXP1 Gene

  1. Annotation, nomenclature and evolution of four novel homeobox genes expressed in the human germ line. (PMID: 17005330) Booth HA … Holland PW (Gene 2007) 3 58

Products for ARGFXP1 Gene

Sources for ARGFXP1 Gene

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