Aliases for ARAP1-AS2 Gene

Subcategory (RNA class) for ARAP1-AS2 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for ARAP1-AS2 Gene

  • ARAP1 Antisense RNA 2 2 3 5
  • ARAP1 Antisense RNA 2 (Non-Protein Coding) 2 3
  • HSALNG0085577 167
  • NONHSAG008996 92
  • ARAP1-AS2 2

External Ids for ARAP1-AS2 Gene

Previous GeneCards Identifiers for ARAP1-AS2 Gene

  • GC11P072413

Summaries for ARAP1-AS2 Gene

GeneCards Summary for ARAP1-AS2 Gene

ARAP1-AS2 (ARAP1 Antisense RNA 2) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ARAP1-AS2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ARAP1-AS2 Gene

Genomics for ARAP1-AS2 Gene

GeneHancer (GH) Regulatory Elements for ARAP1-AS2 Gene

Promoters and enhancers for ARAP1-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J072700 Enhancer 0.6 Ensembl dbSUPER 500.7 +0.0 26 0.2 ZIC2 FOS GLIS1 MAFK ARAP1-AS2 lnc-ATG16L2-10 RPS12P20 ARAP1
GH11J072698 Enhancer 0.6 Ensembl dbSUPER 500.7 -0.4 -373 0.2 FOS MAFK HLF STAT3 ARAP1-AS2 STARD10 PDE2A lnc-PDE2A-4 ARAP1
GH11J072702 Enhancer 0.3 Ensembl dbSUPER 500.7 +0.4 427 0.2 ARAP1-AS2 STARD10 lnc-ATG16L2-10 RPS12P20 ARAP1
GH11J072748 Promoter/Enhancer 2 Ensembl ENCODE CraniofacialAtlas dbSUPER 12.2 +51.0 51032 5.9 EP300 CTCF POLR2G USF1 NCOR1 PHF8 POLR2A CLOCK ZBTB11 TCF7 ARAP1 STARD10 NUMA1 RPS12P20 ARAP1-AS2 LOC100128494 ZNF705E IL18BP piR-47051 lnc-PDE2A-5
GH11J072822 Promoter/Enhancer 1.9 Ensembl ENCODE CraniofacialAtlas dbSUPER 12.2 +121.6 121608 2.3 HNRNPK NRF1 POLR2G PHF8 SIX5 TEAD4 ZIC2 POLR2A ZBTB26 MYC LOC100128494 NUMA1 IL18BP OR7E128P ARAP1 RPS12P20 ARAP1-AS2 RNU6-672P ARAP1-AS1 ATG16L2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ARAP1-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ARAP1-AS2 Gene

Genomic Locations for ARAP1-AS2 Gene
chr11:72,700,474-72,705,608
(GRCh38/hg38)
Size:
5,135 bases
Orientation:
Plus strand
chr11:72,411,519-72,416,889
(GRCh37/hg19)
Size:
5,371 bases
Orientation:
Plus strand

Genomic View for ARAP1-AS2 Gene

Genes around ARAP1-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ARAP1-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARAP1-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARAP1-AS2 Gene

Proteins for ARAP1-AS2 Gene

Post-translational modifications for ARAP1-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ARAP1-AS2 Gene

Domains & Families for ARAP1-AS2 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ARAP1-AS2 Gene

Function for ARAP1-AS2 Gene

Phenotypes From GWAS Catalog for ARAP1-AS2 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ARAP1-AS2 Gene

Localization for ARAP1-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ARAP1-AS2 Gene

Pathways & Interactions for ARAP1-AS2 Gene

PathCards logo

SuperPathways for ARAP1-AS2 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ARAP1-AS2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ARAP1-AS2 Gene

Drugs & Compounds for ARAP1-AS2 Gene

No Compound Related Data Available

Transcripts for ARAP1-AS2 Gene

mRNA/cDNA for ARAP1-AS2 Gene

2 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
2 LncBook transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for ARAP1-AS2 Gene

No ASD Table

Relevant External Links for ARAP1-AS2 Gene

GeneLoc Exon Structure for
ARAP1-AS2

Expression for ARAP1-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ARAP1-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for ARAP1-AS2 Gene

This gene is overexpressed in Whole Blood (x9.1).
genes like me logo Genes that share expression patterns with ARAP1-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ARAP1-AS2 Gene

Orthologs for ARAP1-AS2 Gene

Evolution for ARAP1-AS2 Gene

ENSEMBL:
Gene Tree for ARAP1-AS2 (if available)
TreeFam:
Gene Tree for ARAP1-AS2 (if available)

No data available for Orthologs for ARAP1-AS2 Gene

Paralogs for ARAP1-AS2 Gene

No data available for Paralogs for ARAP1-AS2 Gene

Variants for ARAP1-AS2 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for ARAP1-AS2 Gene

SNP ID Clinical significance and condition Chr 11 pos Variation AA Info Type
786599 Benign: not provided 72,701,793(+) C/T INTRON_VARIANT

Additional dbSNP identifiers (rs#s) for ARAP1-AS2 Gene

Additional Variant Information for ARAP1-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARAP1-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ARAP1-AS2 Gene

Disorders for ARAP1-AS2 Gene

Additional Disease Information for ARAP1-AS2

No disorders were found for ARAP1-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ARAP1-AS2 Gene

Publications for ARAP1-AS2 Gene

  1. Analysis of circulating lncRNA expression profiles in patients with diabetes mellitus and diabetic nephropathy: Differential expression profile of circulating lncRNA
. (PMID: 31079598) Yang Y … Chen T (Clinical nephrology 2019) 3 54
  2. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3 54

Products for ARAP1-AS2 Gene

Sources for ARAP1-AS2 Gene