Aliases for ARAP1-AS2 Gene

Subcategory (RNA class) for ARAP1-AS2 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for ARAP1-AS2 Gene

  • ARAP1 Antisense RNA 2 2 3 5
  • ARAP1 Antisense RNA 2 (Non-Protein Coding) 2 3
  • ARAP1-AS2 2 5
  • NONHSAG008996.2 91
  • HSALNG0085577 164

External Ids for ARAP1-AS2 Gene

Previous GeneCards Identifiers for ARAP1-AS2 Gene

  • GC11P072413

Summaries for ARAP1-AS2 Gene

GeneCards Summary for ARAP1-AS2 Gene

ARAP1-AS2 (ARAP1 Antisense RNA 2) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ARAP1-AS2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ARAP1-AS2 Gene

Genomics for ARAP1-AS2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ARAP1-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J072700 Enhancer 0.6 Ensembl dbSUPER 600.7 +0.0 26 0.2 ZIC2 GLIS1 FOS MAFK ARAP1-AS2 RPS12P20 lnc-ATG16L2-10 PDE2A ARAP1
GH11J072698 Enhancer 0.6 Ensembl dbSUPER 600.7 -0.4 -373 0.2 MAFK FOS HLF ARAP1-AS2 STARD10 PDE2A lnc-PDE2A-4 ARAP1
GH11J072702 Enhancer 0.3 Ensembl dbSUPER 600.7 +0.4 427 0.2 ARAP1-AS2 STARD10 RPS12P20 lnc-ATG16L2-10 PDE2A ARAP1
GH11J072748 Promoter/Enhancer 2 Ensembl ENCODE CraniofacialAtlas dbSUPER 12.2 +51.0 51032 5.9 GATAD2A HNRNPL PRDM10 TFE3 SOX13 IKZF1 NFKBIZ KDM1A BACH1 ZNF143 ARAP1 STARD10 NUMA1 RPS12P20 ARAP1-AS2 LOC100128494 ZNF705E IL18BP piR-47051 MN309280
GH11J072822 Promoter/Enhancer 1.9 Ensembl ENCODE CraniofacialAtlas dbSUPER 12.2 +121.6 121608 2.3 HNRNPL TEAD4 PRDM10 SIX5 ZNF692 POLR2A ZIC2 RBFOX2 ZNF24 PATZ1 NUMA1 LOC100128494 IL18BP OR7E128P ARAP1 RPS12P20 ARAP1-AS2 RNU6-672P ARAP1-AS1 ATG16L2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ARAP1-AS2 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ARAP1-AS2 Gene

Genomic Locations for ARAP1-AS2 Gene
chr11:72,700,474-72,705,608
(GRCh38/hg38)
Size:
5,135 bases
Orientation:
Plus strand
chr11:72,411,519-72,416,889
(GRCh37/hg19)
Size:
5,371 bases
Orientation:
Plus strand

Genomic View for ARAP1-AS2 Gene

Genes around ARAP1-AS2 on UCSC Golden Path with GeneCards custom track
ARAP1-AS2 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ARAP1-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ARAP1-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ARAP1-AS2 Gene

Proteins for ARAP1-AS2 Gene

Post-translational modifications for ARAP1-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ARAP1-AS2 Gene

Domains & Families for ARAP1-AS2 Gene

Gene Families for ARAP1-AS2 Gene

genes like me logo Genes that share domains with ARAP1-AS2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ARAP1-AS2 Gene

Function for ARAP1-AS2 Gene

Phenotypes From GWAS Catalog for ARAP1-AS2 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ARAP1-AS2 Gene

Localization for ARAP1-AS2 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ARAP1-AS2 gene
Compartment Confidence
golgi apparatus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ARAP1-AS2 Gene

Pathways & Interactions for ARAP1-AS2 Gene

PathCards logo

SuperPathways for ARAP1-AS2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ARAP1-AS2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ARAP1-AS2 Gene

Drugs & Compounds for ARAP1-AS2 Gene

No Compound Related Data Available

Transcripts for ARAP1-AS2 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ARAP1-AS2 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000030B95E_9606 lncRNA 1824 5

HGNC: 39994,

RefSeq: NR_146780,

Ensembl: ENST00000500163 (view in UCSC) ,

LncBook: HSALNT0178013,

NONCODE: NONHSAT022790.2,

URS00009B3568_9606 lncRNA 1824 2

LncBook: HSALNT0178014,

NONCODE: NONHSAT159388.1,

ARAP1-AS2 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ARAP1-AS2 Gene

1 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for ARAP1-AS2 Gene

No ASD Table

Relevant External Links for ARAP1-AS2 Gene

GeneLoc Exon Structure for
ARAP1-AS2

Expression for ARAP1-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ARAP1-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for ARAP1-AS2 Gene

This gene is overexpressed in Whole Blood (x9.1).
genes like me logo Genes that share expression patterns with ARAP1-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ARAP1-AS2 Gene

Orthologs for ARAP1-AS2 Gene

Evolution for ARAP1-AS2 Gene

ENSEMBL:
Gene Tree for ARAP1-AS2 (if available)
TreeFam:
Gene Tree for ARAP1-AS2 (if available)

No data available for Orthologs for ARAP1-AS2 Gene

Paralogs for ARAP1-AS2 Gene

No data available for Paralogs for ARAP1-AS2 Gene

Variants for ARAP1-AS2 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for ARAP1-AS2 Gene

SNP ID Clinical significance and condition Chr 11 pos Variation AA Info Type
786599 Benign: not provided 72,701,793(+) C/T INTRON_VARIANT

Additional dbSNP identifiers (rs#s) for ARAP1-AS2 Gene

Additional Variant Information for ARAP1-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ARAP1-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ARAP1-AS2 Gene

Disorders for ARAP1-AS2 Gene

No disorders were found for ARAP1-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ARAP1-AS2 Gene

Publications for ARAP1-AS2 Gene

  1. Analysis of circulating lncRNA expression profiles in patients with diabetes mellitus and diabetic nephropathy: Differential expression profile of circulating lncRNA
. (PMID: 31079598) Yang Y … Chen T (Clinical nephrology 2019) 3
  2. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3

Products for ARAP1-AS2 Gene

Sources for ARAP1-AS2 Gene