Aliases for AQP4-AS1 Gene

Subcategory (RNA class) for AQP4-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for AQP4-AS1 Gene

  • AQP4 Antisense RNA 1 2 3 5
  • AQP4-AS1 2 5 165
  • CHST9 Antisense RNA 1 (Non-Protein Coding) 3
  • Chromosome 18 Open Reading Frame 16 2
  • CHST9 Antisense RNA 1 2
  • NONHSAG023597.2 91
  • HSALNG0120581 164
  • CHST9-AS1 3
  • C18orf16 3
  • FLJ30507 2

External Ids for AQP4-AS1 Gene

Previous HGNC Symbols for AQP4-AS1 Gene

  • C18orf16
  • CHST9-AS1

Previous GeneCards Identifiers for AQP4-AS1 Gene

  • GC18P024235

Summaries for AQP4-AS1 Gene

GeneCards Summary for AQP4-AS1 Gene

AQP4-AS1 (AQP4 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for AQP4-AS1 Gene

Additional gene information for AQP4-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for AQP4-AS1 Gene

Genomics for AQP4-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for AQP4-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J026655 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +1.0 982 4.2 PRDM10 ZNF692 PRDM1 ZIC2 ZSCAN4 POLR2A PATZ1 ZNF501 EZH2 CTCF AQP4-AS1 KCTD1 lnc-AQP4-2 PCAT18 LOC102725227 TAF4B
GH18J026862 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE 600.1 +208.6 208634 2.8 ZNF692 ZNF501 EZH2 ZNF600 ZNF341 ZNF561 SCRT2 ZBTB20 SP2 ZXDB AQP4 AQP4-AS1 SS18 lnc-CHST9-2 KCTD1
GH18J026710 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 6.8 +55.0 54986 1.2 SP1 TCF12 IKZF2 RCOR1 TRIM22 PKNOX1 EED ARID3A ZSCAN29 DPF2 AQP4-AS1 PCAT18 TAF4B RF00017-2646 ENSG00000275900 KCTD1 AQP4
GH18J026927 Enhancer 0.5 Ensembl ENCODE 11.7 +272.3 272263 2.4 SPI1 NANOG AQP4-AS1 lnc-AQP4-6 ENSG00000266549 lnc-AQP4-3 AQP4 CHST9
GH18J026919 Enhancer 0.3 Ensembl 19.5 +264.4 264364 0.6 ZNF777 AQP4-AS1 lnc-AQP4-6 ENSG00000266549 lnc-AQP4-3 AQP4 CHST9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around AQP4-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for AQP4-AS1 Gene

Genomic Locations for AQP4-AS1 Gene
chr18:26,655,737-27,191,728
(GRCh38/hg38)
Size:
535,992 bases
Orientation:
Plus strand
chr18:24,235,706-24,770,662
(GRCh37/hg19)
Size:
534,957 bases
Orientation:
Plus strand

Genomic View for AQP4-AS1 Gene

Genes around AQP4-AS1 on UCSC Golden Path with GeneCards custom track
AQP4-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
AQP4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AQP4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AQP4-AS1 Gene

Proteins for AQP4-AS1 Gene

Post-translational modifications for AQP4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AQP4-AS1 Gene

Domains & Families for AQP4-AS1 Gene

Gene Families for AQP4-AS1 Gene

genes like me logo Genes that share domains with AQP4-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for AQP4-AS1 Gene

Function for AQP4-AS1 Gene

Phenotypes From GWAS Catalog for AQP4-AS1 Gene

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for AQP4-AS1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AQP4-AS1 Gene

Localization for AQP4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AQP4-AS1 Gene

Pathways & Interactions for AQP4-AS1 Gene

PathCards logo

SuperPathways for AQP4-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for AQP4-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for AQP4-AS1 Gene

Drugs & Compounds for AQP4-AS1 Gene

No Compound Related Data Available

Transcripts for AQP4-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for AQP4-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000BF0FE_9606 lncRNA 2392 5

HGNC: 26399,

RefSeq: NR_026908,

LncBook: HSALNT0249226, HSALNT0249228,

LNCipedia: AQP4-AS1:17, AQP4-AS1:7,

NONCODE: NONHSAT058766.2,

URS000041043F_9606 lncRNA 2177 4

Ensembl: ENST00000578701 (view in UCSC) ,

LncBook: HSALNT0249224,

LNCipedia: AQP4-AS1:6,

NONCODE: NONHSAT058765.2,

URS0000811996_9606 lncRNA 550 4

Ensembl: ENST00000631265 (view in UCSC) ,

LncBook: HSALNT0249238,

LNCipedia: AQP4-AS1:9,

NONCODE: NONHSAT177557.1,

URS00003F7520_9606 lncRNA 525 4

Ensembl: ENST00000582605 (view in UCSC) ,

LncBook: HSALNT0249176, HSALNT0249177,

LNCipedia: AQP4-AS1:1, AQP4-AS1:14,

NONCODE: NONHSAT058754.2,

URS00008117DF_9606 lncRNA 467 4

Ensembl: ENST00000628325 (view in UCSC) ,

LncBook: HSALNT0249223,

LNCipedia: AQP4-AS1:5,

NONCODE: NONHSAT177556.1,

AQP4-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for AQP4-AS1 Gene

1 REFSEQ mRNAs :
4 NCBI additional mRNA sequence :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for AQP4-AS1

Alternative Splicing Database (ASD) splice patterns (SP) for AQP4-AS1 Gene

No ASD Table

Relevant External Links for AQP4-AS1 Gene

GeneLoc Exon Structure for
AQP4-AS1

Expression for AQP4-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for AQP4-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for AQP4-AS1 Gene

This gene is overexpressed in Brain - Hippocampus (x6.2), Brain - Caudate (basal ganglia) (x6.1), Brain - Amygdala (x5.5), Brain - Putamen (basal ganglia) (x4.4), and Brain - Nucleus accumbens (basal ganglia) (x4.2).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for AQP4-AS1

SOURCE GeneReport for Unigene cluster for AQP4-AS1 Gene:

Hs.559280
genes like me logo Genes that share expression patterns with AQP4-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AQP4-AS1 Gene

Orthologs for AQP4-AS1 Gene

Evolution for AQP4-AS1 Gene

ENSEMBL:
Gene Tree for AQP4-AS1 (if available)
TreeFam:
Gene Tree for AQP4-AS1 (if available)

No data available for Orthologs for AQP4-AS1 Gene

Paralogs for AQP4-AS1 Gene

No data available for Paralogs for AQP4-AS1 Gene

Variants for AQP4-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for AQP4-AS1 Gene

SNP ID Clinical significance and condition Chr 18 pos Variation AA Info Type
737793 Benign: not provided 26,865,663(+) C/A SYNONYMOUS_VARIANT,FIVE_PRIME_UTR_VARIANT
788912 Benign: not provided 26,916,412(+) G/C SYNONYMOUS_VARIANT,THREE_PRIME_UTR_VARIANT

Additional dbSNP identifiers (rs#s) for AQP4-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for AQP4-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2761995 CNV loss 21179565
esv3893079 CNV gain 25118596
nsv1140315 OTHER inversion 24896259
nsv527852 CNV loss 19592680
nsv833600 CNV gain 17160897
nsv961040 CNV duplication 23825009
nsv962502 CNV duplication 23825009

Additional Variant Information for AQP4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AQP4-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for AQP4-AS1 Gene

Disorders for AQP4-AS1 Gene

No disorders were found for AQP4-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AQP4-AS1 Gene

Publications for AQP4-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for AQP4-AS1 Gene

Sources for AQP4-AS1 Gene