Aliases for APTR Gene

Subcategory (RNA class) for APTR Gene


Quality Score for this RNA gene is


Aliases for APTR Gene

  • Alu-Mediated CDKN1A/P21 Transcriptional Regulator 2 3 5
  • Alu-Mediated CDKN1A/P21 Transcriptional Regulator (Non-Protein Coding) 2 3
  • RSBN1L Antisense RNA 1 (Non-Protein Coding) 2 3
  • APTR 2 170
  • HSALNG0059132 169
  • NONHSAG048057 94
  • RSBN1L-AS1 3

External Ids for APTR Gene

Previous HGNC Symbols for APTR Gene

  • RSBN1L-AS1

Previous GeneCards Identifiers for APTR Gene

  • GC07M077657

Summaries for APTR Gene

GeneCards Summary for APTR Gene

APTR (Alu-Mediated CDKN1A/P21 Transcriptional Regulator) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with APTR include Liver Cirrhosis and Glioblastoma.

Rfam classification for APTR Gene

  • Metazoan signal recognition particle RNA

Additional gene information for APTR Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for APTR Gene

Genomics for APTR Gene

GeneHancer (GH) Regulatory Elements for APTR Gene

Promoters and enhancers for APTR Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around APTR on UCSC Golden Path with GeneCards custom track

Genomic Locations for APTR Gene

Genomic Locations for APTR Gene
219,362 bases
Minus strand
39,686 bases
Minus strand

Genomic View for APTR Gene

Genes around APTR on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
APTR Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for APTR Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for APTR Gene

Proteins for APTR Gene

No data available for DME Specific Peptides for APTR Gene

Domains & Families for APTR Gene

Gene Families for APTR Gene

genes like me logo Genes that share domains with APTR: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for APTR Gene

Function for APTR Gene

Phenotypes From GWAS Catalog for APTR Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for APTR Gene

Localization for APTR Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for APTR Gene

Pathways & Interactions for APTR Gene

PathCards logo

SuperPathways for APTR Gene

No Data Available

Gene Ontology (GO) - Biological Process for APTR Gene


No data available for Pathways by source and SIGNOR curated interactions for APTR Gene

Drugs & Compounds for APTR Gene

No Compound Related Data Available

Transcripts for APTR Gene

mRNA/cDNA for APTR Gene

(4) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(11) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(31) RNACentral transcripts :
(11) LncBook transcripts :
(12) NONCODE transcripts :
(28) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for APTR Gene

No ASD Table

Relevant External Links for APTR Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for APTR Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for APTR Gene

NURSA nuclear receptor signaling pathways regulating expression of APTR Gene:

genes like me logo Genes that share expression patterns with APTR: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for APTR Gene

Orthologs for APTR Gene

Evolution for APTR Gene

Gene Tree for APTR (if available)
Gene Tree for APTR (if available)

No data available for Orthologs for APTR Gene

Paralogs for APTR Gene

No data available for Paralogs for APTR Gene

Variants for APTR Gene

Sequence variations from dbSNP and Humsavar for APTR Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000181461 -- 77,672,179(-) G/A genic_downstream_transcript_variant, intron_variant
rs1000339579 -- 77,675,818(-) C/G genic_downstream_transcript_variant, intron_variant
rs1000350679 -- 77,686,586(-) C/A intron_variant
rs1000405551 -- 77,688,260(-) G/C intron_variant
rs1000487980 -- 77,686,395(-) A/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for APTR Gene

Variant ID Type Subtype PubMed ID
esv2657737 CNV deletion 23128226
esv2661869 CNV deletion 23128226
esv2675970 CNV deletion 23128226
esv2734703 CNV deletion 23290073
esv3613804 CNV loss 21293372
esv3613805 CNV loss 21293372
esv3613806 CNV loss 21293372
nsv1114979 CNV deletion 24896259
nsv831039 CNV gain 17160897

Additional Variant Information for APTR Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for APTR Gene

Disorders for APTR Gene

MalaCards: The human disease database

(2) MalaCards diseases for APTR Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
liver cirrhosis
  • cirrhosis
  • glioblastoma multiforme
- elite association - COSMIC cancer census association via MalaCards
Search APTR in MalaCards View complete list of genes associated with diseases

Additional Disease Information for APTR

genes like me logo Genes that share disorders with APTR: view

No data available for UniProtKB/Swiss-Prot and Genatlas for APTR Gene

Publications for APTR Gene

  1. A new lncRNA, APTR, associates with and represses the CDKN1A/p21 promoter by recruiting polycomb proteins. (PMID: 24748121) Negishi M … Dutta A (PloS one 2014) 2 3 56
  2. APTR is a prognostic marker in cirrhotic patients with portal hypertension during TIPS procedure. (PMID: 29274906) Yu S … Zhou Q (Gene 2018) 3 56

Products for APTR Gene

Sources for APTR Gene