Aliases for APPBP2-DT Gene

Data sources for APPBP2-DT Gene:

Subcategory (RNA class) for APPBP2-DT Gene

lncRNA

Aliases for APPBP2-DT Gene

External Ids for APPBP2-DT Gene

Summaries for APPBP2-DT Gene

GeneCards Summary for APPBP2-DT Gene

APPBP2-DT (APPBP2 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for APPBP2-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for APPBP2-DT Gene

Genomics for APPBP2-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for APPBP2-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J060523 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 250.7 -0.7 -671 4.4 ZSCAN16 CHD2 TBP ZBTB10 MXD4 CEBPA MNT IKZF1 SMAD5 ETS1 APPBP2 APPBP2-DT TUBD1 HEATR6 PPM1D RPS6KB1 NDUFB8P2 CLTC ENSG00000275860 ENSG00000270553
GH17J060534 Enhancer 0.7 Ensembl ENCODE 0.4 +9.6 9563 1.8 SAP130 BCL6 SOX5 NFE2 ATF3 SOX13 NFXL1 CEBPB FOS EMSY HEATR6 ENSG00000275860 APPBP2 APPBP2-DT piR-55657-114 PPM1D
GH17J060529 Enhancer 0.4 Ensembl 0.7 +3.6 3630 0.2 PRDM4 BCL6B ATF2 APPBP2 APPBP2-DT piR-55657-114 PPM1D
GH17J060535 Enhancer 0.5 ENCODE 0.4 +8.2 8183 0.8 FOXA2 SOX5 NFE2L2 NFE2 ATF3 SOX13 CEBPB EMSY ZMYM3 APPBP2 APPBP2-DT piR-55657-114 PPM1D
GH17J060545 Enhancer 0.5 Ensembl 0.4 +19.6 19630 0.2 FOXA2 SOX5 SOX13 KDM1A PRDM1 piR-55657-114 APPBP2 APPBP2-DT PPM1D
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around APPBP2-DT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for APPBP2-DT Gene

Latest Assembly
chr17:60,526,271-60,550,798
(GRCh38/hg38)
Size:
24,528 bases
Orientation:
Plus strand

Previous Assembly
chr17:58,603,654-58,628,159
(GRCh37/hg19 by Ensembl)
Size:
24,506 bases
Orientation:
Plus strand

Genomic View for APPBP2-DT Gene

Genes around APPBP2-DT on UCSC Golden Path with GeneCards custom track
APPBP2-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
APPBP2-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for APPBP2-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for APPBP2-DT Gene

Proteins for APPBP2-DT Gene

Post-translational modifications for APPBP2-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for APPBP2-DT Gene

Domains & Families for APPBP2-DT Gene

Gene Families for APPBP2-DT Gene

genes like me logo Genes that share domains with APPBP2-DT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for APPBP2-DT Gene

Function for APPBP2-DT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for APPBP2-DT Gene

Localization for APPBP2-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for APPBP2-DT Gene

Pathways & Interactions for APPBP2-DT Gene

PathCards logo

SuperPathways for APPBP2-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for APPBP2-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for APPBP2-DT Gene

Drugs & Compounds for APPBP2-DT Gene

No Compound Related Data Available

Transcripts for APPBP2-DT Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for APPBP2-DT Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000003E04F_9606 lncRNA 562 4

Ensembl: ENST00000559739 (view in UCSC) ,

LncBook: HSALNT0243405,

LNCipedia: lnc-PPM1D-1:1,

NONCODE: NONHSAT055092.2,

URS00001E0727_9606 lncRNA 553 4

Ensembl: ENST00000558027 (view in UCSC) ,

LncBook: HSALNT0243406,

LNCipedia: lnc-PPM1D-1:2,

NONCODE: NONHSAT055093.2,

URS0000EF324A_9606 lncRNA 932 1

Ensembl: ENST00000661567 (view in UCSC) ,

URS00008B6D21_9606 lncRNA 3948 3

LncBook: HSALNT0243408,

LNCipedia: lnc-PPM1D-1:3,

NONCODE: NONHSAT055096.2,

URS00008B3FC7_9606 lncRNA 1680 3

LncBook: HSALNT0243407,

LNCipedia: lnc-PPM1D-1:11,

NONCODE: NONHSAT055094.2,

APPBP2-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for APPBP2-DT Gene

No ASD Table

Relevant External Links for APPBP2-DT Gene

GeneLoc Exon Structure for
APPBP2-DT

No data available for mRNA/cDNA for APPBP2-DT Gene

Expression for APPBP2-DT Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for APPBP2-DT Gene

Orthologs for APPBP2-DT Gene

Evolution for APPBP2-DT Gene

ENSEMBL:
Gene Tree for APPBP2-DT (if available)
TreeFam:
Gene Tree for APPBP2-DT (if available)

No data available for Orthologs for APPBP2-DT Gene

Paralogs for APPBP2-DT Gene

No data available for Paralogs for APPBP2-DT Gene

Variants for APPBP2-DT Gene

Additional Variant Information for APPBP2-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
APPBP2-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for APPBP2-DT Gene

Disorders for APPBP2-DT Gene

Additional Disease Information for APPBP2-DT

Open Targets Platform
Open Targets Platform

No disorders were found for APPBP2-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for APPBP2-DT Gene

Publications for APPBP2-DT Gene

No publications were found for APPBP2-DT Gene.

No data available for Mastermind for APPBP2-DT Gene

Products for APPBP2-DT Gene

Sources for APPBP2-DT Gene