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Aliases for APPBP2 Gene

Aliases for APPBP2 Gene

  • Amyloid Beta Precursor Protein Binding Protein 2 2 3 5
  • Protein Interacting With APP Tail 1 2 3 4
  • Amyloid Beta Precursor Protein (Cytoplasmic Tail) Binding Protein 2 2 3
  • APP-BP2 3 4
  • PAT1 3 4
  • Amyloid Beta Precursor Protein (Cytoplasmic Tail)-Binding Protein 2 2
  • Amyloid Beta Precursor Protein-Binding Protein 2 4
  • Amyloid Protein-Binding Protein 2 3
  • HS.84084 3
  • KIAA0228 4

External Ids for APPBP2 Gene

Previous GeneCards Identifiers for APPBP2 Gene

  • GC17M058257
  • GC17M060971
  • GC17M058862
  • GC17M058994
  • GC17M055875
  • GC17M058520
  • GC17M053891

Summaries for APPBP2 Gene

Entrez Gene Summary for APPBP2 Gene

  • The protein encoded by this gene interacts with microtubules and is functionally associated with beta-amyloid precursor protein transport and/or processing. The beta-amyloid precursor protein is a cell surface protein with signal-transducing properties, and it is thought to play a role in the pathogenesis of Alzheimer's disease. The encoded protein may be involved in regulating cell death. This gene has been found to be highly expressed in breast cancer. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2013]

GeneCards Summary for APPBP2 Gene

APPBP2 (Amyloid Beta Precursor Protein Binding Protein 2) is a Protein Coding gene. Among its related pathways are Regulation of Androgen receptor activity. Gene Ontology (GO) annotations related to this gene include microtubule motor activity.

UniProtKB/Swiss-Prot for APPBP2 Gene

  • May play a role in intracellular protein transport. May be involved in the translocation of APP along microtubules toward the cell surface.

Gene Wiki entry for APPBP2 Gene

Additional gene information for APPBP2 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for APPBP2 Gene

Genomics for APPBP2 Gene

GeneHancer (GH) Regulatory Elements for APPBP2 Gene

Promoters and enhancers for APPBP2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J060523 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 655.1 +0.7 739 3.4 HDGF PKNOX1 SMAD1 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 APPBP2 ENSG00000259349 KRT18P61 TBC1D3P1 TBC1D3P1-DHX40P1 DHX40P1 RPS29P21 CLTC GC17P060514
GH17J059564 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 48.1 +960.3 960301 2.1 CLOCK YBX1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF416 ZNF143 DHX40 HEATR6 TUBD1 APPBP2 NDUFB8P2 RPS6KB1 SKA2 SMG8 LOC100996660 SPDYE22P
GH17J059824 Promoter/Enhancer 2.8 VISTA FANTOM5 Ensembl ENCODE dbSUPER 14.1 +683.4 683354 36.2 MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 GC17P059842 GC17P059843 GC17P059844 GC17P059845 GC17M059841 GC17M059842 GC17M059843 MIR21 PPM1D TUBD1
GH17J060077 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE 17.3 +445.7 445668 6.9 PKNOX1 FOXA2 ARID4B SIN3A DMAP1 YY1 POLR2B ZNF548 FOS KLF13 HEATR6 LOC105371849 TUBD1 PPM1D APPBP2 SMG8 DHX40 RPS6KB1 WFDC21P
GH17J061393 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.6 -879.2 -879243 24.1 HDGF PKNOX1 FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 TBX2 PPM1D MED13 TBX2-AS1 TBX4 APPBP2 C17orf82 LOC101927855
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around APPBP2 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the APPBP2 gene promoter:
  • HTF
  • RORalpha2
  • ATF6
  • POU2F1a
  • POU2F1
  • SEF-1 (1)
  • CUTL1
  • GATA-1
  • MRF-2

Genomic Locations for APPBP2 Gene

Genomic Locations for APPBP2 Gene
chr17:60,443,149-60,526,240
(GRCh38/hg38)
Size:
83,092 bases
Orientation:
Minus strand
chr17:58,520,520-58,603,580
(GRCh37/hg19)
Size:
83,061 bases
Orientation:
Minus strand

Genomic View for APPBP2 Gene

Genes around APPBP2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
APPBP2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for APPBP2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for APPBP2 Gene

Proteins for APPBP2 Gene

  • Protein details for APPBP2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q92624-APBP2_HUMAN
    Recommended name:
    Amyloid protein-binding protein 2
    Protein Accession:
    Q92624
    Secondary Accessions:
    • A8K862
    • O95095
    • Q8WVC9

    Protein attributes for APPBP2 Gene

    Size:
    585 amino acids
    Molecular mass:
    66853 Da
    Quaternary structure:
    • Binds APP.
    SequenceCaution:
    • Sequence=BAA13217.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for APPBP2 Gene

Post-translational modifications for APPBP2 Gene

  • Rapidly degraded by the proteasome upon overexpression of a C-terminal fragment of APP.
  • Ubiquitination at Lys522, Lys430, and Lys379
  • Modification sites at PhosphoSitePlus

Other Protein References for APPBP2 Gene

No data available for DME Specific Peptides for APPBP2 Gene

Domains & Families for APPBP2 Gene

Gene Families for APPBP2 Gene

Human Protein Atlas (HPA):
  • Cancer-related genes
  • Predicted intracellular proteins

Protein Domains for APPBP2 Gene

Suggested Antigen Peptide Sequences for APPBP2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with APPBP2: view

No data available for UniProtKB/Swiss-Prot for APPBP2 Gene

Function for APPBP2 Gene

Molecular function for APPBP2 Gene

UniProtKB/Swiss-Prot Function:
May play a role in intracellular protein transport. May be involved in the translocation of APP along microtubules toward the cell surface.
GENATLAS Biochemistry:
amyloid beta precursor protein binding protein 2, cytoplasmic,also associating with membranes cofractionating with APP vesicle,interacting with microtubule,binding the basolateral sorting signal in the cytoplasmic tail of APP

Phenotypes From GWAS Catalog for APPBP2 Gene

Gene Ontology (GO) - Molecular Function for APPBP2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003777 microtubule motor activity TAS 9843960
GO:0005515 protein binding IPI 16189514
genes like me logo Genes that share ontologies with APPBP2: view
genes like me logo Genes that share phenotypes with APPBP2: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for APPBP2

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for APPBP2 Gene

Localization for APPBP2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for APPBP2 Gene

Nucleus. Cytoplasm, cytoskeleton. Membrane; Peripheral membrane protein. Note=Associated with membranes and microtubules.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for APPBP2 gene
Compartment Confidence
nucleus 5
cytoskeleton 4
cytosol 4
mitochondrion 1

Gene Ontology (GO) - Cellular Components for APPBP2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus NAS 11742091
GO:0005737 cytoplasm TAS,NAS 11742091
GO:0005856 cytoskeleton IEA --
GO:0005874 microtubule IEA --
GO:0005875 microtubule associated complex TAS 9843960
genes like me logo Genes that share ontologies with APPBP2: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for APPBP2 Gene

Pathways & Interactions for APPBP2 Gene

genes like me logo Genes that share pathways with APPBP2: view

Pathways by source for APPBP2 Gene

1 BioSystems pathway for APPBP2 Gene

Gene Ontology (GO) - Biological Process for APPBP2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006886 intracellular protein transport TAS 9843960
GO:0015031 protein transport IEA --
GO:0046907 intracellular transport IDA 9843960
genes like me logo Genes that share ontologies with APPBP2: view

No data available for SIGNOR curated interactions for APPBP2 Gene

Drugs & Compounds for APPBP2 Gene

No Compound Related Data Available

Transcripts for APPBP2 Gene

mRNA/cDNA for APPBP2 Gene

Unigene Clusters for APPBP2 Gene

Amyloid beta precursor protein (cytoplasmic tail) binding protein 2:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for APPBP2

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for APPBP2 Gene

No ASD Table

Relevant External Links for APPBP2 Gene

GeneLoc Exon Structure for
APPBP2
ECgene alternative splicing isoforms for
APPBP2

Expression for APPBP2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for APPBP2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for APPBP2 Gene

This gene is overexpressed in Plasma (66.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for APPBP2 Gene



Protein tissue co-expression partners for APPBP2 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of APPBP2 Gene:

APPBP2

SOURCE GeneReport for Unigene cluster for APPBP2 Gene:

Hs.84084

Evidence on tissue expression from TISSUES for APPBP2 Gene

  • Bone marrow(4.1)
  • Skin(4.1)
  • Nervous system(3.4)
genes like me logo Genes that share expression patterns with APPBP2: view

No data available for mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for APPBP2 Gene

Orthologs for APPBP2 Gene

This gene was present in the common ancestor of animals.

Orthologs for APPBP2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia APPBP2 34 33
  • 99.94 (n)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia APPBP2 34
  • 97 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia APPBP2 34
  • 97 (a)
OneToOne
dog
(Canis familiaris)
Mammalia APPBP2 34 33
  • 95.78 (n)
OneToOne
cow
(Bos Taurus)
Mammalia APPBP2 34 33
  • 95.73 (n)
OneToOne
mouse
(Mus musculus)
Mammalia Appbp2 16 34 33
  • 91.28 (n)
rat
(Rattus norvegicus)
Mammalia Appbp2 33
  • 90.2 (n)
chicken
(Gallus gallus)
Aves APPBP2 34 33
  • 84.65 (n)
OneToOne
lizard
(Anolis carolinensis)
Reptilia APPBP2 34
  • 92 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia appbp2 33
  • 79.2 (n)
African clawed frog
(Xenopus laevis)
Amphibia Xl.23796 33
zebrafish
(Danio rerio)
Actinopterygii appbp2 34 33
  • 77.2 (n)
OneToOne
wufb78e11 33
fruit fly
(Drosophila melanogaster)
Insecta Pat1 34 33
  • 52.06 (n)
OneToOne
CG10695 35
  • 47 (a)
Species where no ortholog for APPBP2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for APPBP2 Gene

ENSEMBL:
Gene Tree for APPBP2 (if available)
TreeFam:
Gene Tree for APPBP2 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for APPBP2: view image

Paralogs for APPBP2 Gene

No data available for Paralogs for APPBP2 Gene

Variants for APPBP2 Gene

Sequence variations from dbSNP and Humsavar for APPBP2 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000020925 -- 60,448,250(-) C/T intron_variant
rs1000024257 -- 60,525,412(-) C/A genic_upstream_transcript_variant, intron_variant
rs1000045174 -- 60,520,888(-) C/T genic_upstream_transcript_variant, intron_variant
rs1000113743 -- 60,468,957(-) A/T genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1000169509 -- 60,445,468(-) C/T 3_prime_UTR_variant

Structural Variations from Database of Genomic Variants (DGV) for APPBP2 Gene

Variant ID Type Subtype PubMed ID
nsv828080 CNV loss 20364138
nsv575827 CNV loss 21841781
nsv474695 CNV novel sequence insertion 20440878
nsv1116229 CNV deletion 24896259
esv3640927 CNV loss 21293372
esv3640926 CNV gain 21293372
esv29677 CNV loss 19812545
esv2677176 CNV deletion 23128226
esv2671823 CNV deletion 23128226
esv1010187 CNV insertion 20482838
dgv3273n100 CNV gain 25217958

Variation tolerance for APPBP2 Gene

Residual Variation Intolerance Score: 21% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 6.50; 77.62% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for APPBP2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
APPBP2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for APPBP2 Gene

Disorders for APPBP2 Gene

Additional Disease Information for APPBP2

No disorders were found for APPBP2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for APPBP2 Gene

Publications for APPBP2 Gene

  1. PAT1, a microtubule-interacting protein, recognizes the basolateral sorting signal of amyloid precursor protein. (PMID: 9843960) Zheng P … Pimplikar SW (Proceedings of the National Academy of Sciences of the United States of America 1998) 2 3 4 22 58
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  3. The gamma -secretase-cleaved C-terminal fragment of amyloid precursor protein mediates signaling to the nucleus. (PMID: 11742091) Gao Y … Pimplikar SW (Proceedings of the National Academy of Sciences of the United States of America 2001) 3 4 58
  4. Prediction of the coding sequences of unidentified human genes. VI. The coding sequences of 80 new genes (KIAA0201-KIAA0280) deduced by analysis of cDNA clones from cell line KG-1 and brain. (PMID: 9039502) Nagase T … Nomura N (DNA research : an international journal for rapid publication of reports on genes and genomes 1996) 3 4 58
  5. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 58

Products for APPBP2 Gene

Sources for APPBP2 Gene

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