Aliases for APOOP5 Gene

Aliases for APOOP5 Gene

  • Apolipoprotein O Pseudogene 5 2 3 5

External Ids for APOOP5 Gene

Previous GeneCards Identifiers for APOOP5 Gene

  • GC16M059790

Summaries for APOOP5 Gene

GeneCards Summary for APOOP5 Gene

APOOP5 (Apolipoprotein O Pseudogene 5) is a Pseudogene.

Additional gene information for APOOP5 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for APOOP5 Gene

Genomics for APOOP5 Gene

GeneHancer (GH) Regulatory Elements for APOOP5 Gene

Promoters and enhancers for APOOP5 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J059748 Enhancer 0.3 Ensembl 0.4 +6.5 6490 0.6 USF1 MAX APOOP5 lnc-GOT2-6 RF00001-133 MF281437-026
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around APOOP5 on UCSC Golden Path with GeneCards custom track

Genomic Locations for APOOP5 Gene

Genomic Locations for APOOP5 Gene
chr16:59,709,993-59,755,191
(GRCh38/hg38)
Size:
45,199 bases
Orientation:
Minus strand
chr16:59,788,036-59,789,095
(GRCh37/hg19)
Size:
1,060 bases
Orientation:
Minus strand

Genomic View for APOOP5 Gene

Genes around APOOP5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
APOOP5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for APOOP5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for APOOP5 Gene

Proteins for APOOP5 Gene

Post-translational modifications for APOOP5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for APOOP5 Gene

Domains & Families for APOOP5 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for APOOP5 Gene

Function for APOOP5 Gene

Phenotypes From GWAS Catalog for APOOP5 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for APOOP5 Gene

Localization for APOOP5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for APOOP5 Gene

Pathways & Interactions for APOOP5 Gene

PathCards logo

SuperPathways for APOOP5 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for APOOP5 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for APOOP5 Gene

Drugs & Compounds for APOOP5 Gene

No Compound Related Data Available

Transcripts for APOOP5 Gene

mRNA/cDNA for APOOP5 Gene

2 NCBI additional mRNA sequence :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for APOOP5 Gene

No ASD Table

Relevant External Links for APOOP5 Gene

GeneLoc Exon Structure for
APOOP5

Expression for APOOP5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for APOOP5 Gene

mRNA differential expression in normal tissues according to GTEx for APOOP5 Gene

This gene is overexpressed in Testis (x48.4).
genes like me logo Genes that share expression patterns with APOOP5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for APOOP5 Gene

Orthologs for APOOP5 Gene

Evolution for APOOP5 Gene

ENSEMBL:
Gene Tree for APOOP5 (if available)
TreeFam:
Gene Tree for APOOP5 (if available)

No data available for Orthologs for APOOP5 Gene

Paralogs for APOOP5 Gene

No data available for Paralogs for APOOP5 Gene

Variants for APOOP5 Gene

Structural Variations from Database of Genomic Variants (DGV) for APOOP5 Gene

Variant ID Type Subtype PubMed ID
esv2422221 CNV deletion 17116639
nsv507820 OTHER sequence alteration 20534489
nsv9451 CNV loss 18304495
nsv978157 CNV duplication 23825009

Additional Variant Information for APOOP5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
APOOP5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for APOOP5 Gene

Disorders for APOOP5 Gene

Additional Disease Information for APOOP5

No disorders were found for APOOP5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for APOOP5 Gene

Publications for APOOP5 Gene

No publications were found for APOOP5 Gene.

Products for APOOP5 Gene

Sources for APOOP5 Gene