Aliases for APOOP3 Gene

Aliases for APOOP3 Gene

  • Apolipoprotein O Pseudogene 3 2 3 5
  • APOOP3 5

External Ids for APOOP3 Gene

Previous GeneCards Identifiers for APOOP3 Gene

  • GC12P065528

Summaries for APOOP3 Gene

GeneCards Summary for APOOP3 Gene

APOOP3 (Apolipoprotein O Pseudogene 3) is a Pseudogene.

Additional gene information for APOOP3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for APOOP3 Gene

Genomics for APOOP3 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for APOOP3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J065121 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE 0.4 -13.3 -13260 0.8 CREB1 CTCF KDM1A ZNF692 PATZ1 ZNF501 POLR2A EZH2 ZNF600 ZNF341 WIF1 APOOP3 LEMD3
GH12J065124 Enhancer 0.6 Ensembl 0.4 -10.0 -9960 2.6 CREB1 CTCF RAD21 TRIM22 SMC3 SPI1 ZNF384 ZNF654 PRDM6 ZNF660 RNU6-166P MSRB3 ENSG00000250280 LEMD3 WIF1 APOOP3 lnc-WIF1-4
GH12J065139 Enhancer 0.3 Ensembl 0.7 +4.9 4940 1.2 PKNOX1 SPI1 LEMD3 RNU6-166P APOOP3 WIF1 piR-57133-121 lnc-WIF1-4
GH12J065123 Enhancer 0.5 Ensembl 0.4 -11.8 -11760 0.2 ZSCAN5C PRDM6 KLF1 MNT L3MBTL2 ZSCAN21 WIF1 APOOP3 LEMD3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around APOOP3 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for APOOP3 Gene

Genomic Locations for APOOP3 Gene
chr12:65,134,661-65,135,548
(GRCh38/hg38)
Size:
888 bases
Orientation:
Plus strand
chr12:65,528,441-65,529,340
(GRCh37/hg19)
Size:
900 bases
Orientation:
Plus strand

Genomic View for APOOP3 Gene

Genes around APOOP3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
APOOP3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for APOOP3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for APOOP3 Gene

Proteins for APOOP3 Gene

Post-translational modifications for APOOP3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for APOOP3 Gene

Domains & Families for APOOP3 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for APOOP3 Gene

Function for APOOP3 Gene

Phenotypes From GWAS Catalog for APOOP3 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for APOOP3 Gene

Localization for APOOP3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for APOOP3 Gene

Pathways & Interactions for APOOP3 Gene

PathCards logo

SuperPathways for APOOP3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for APOOP3 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for APOOP3 Gene

Drugs & Compounds for APOOP3 Gene

No Compound Related Data Available

Transcripts for APOOP3 Gene

mRNA/cDNA for APOOP3 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for APOOP3 Gene

No ASD Table

Relevant External Links for APOOP3 Gene

GeneLoc Exon Structure for
APOOP3

Expression for APOOP3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for APOOP3 Gene

genes like me logo Genes that share expression patterns with APOOP3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for APOOP3 Gene

Orthologs for APOOP3 Gene

Evolution for APOOP3 Gene

ENSEMBL:
Gene Tree for APOOP3 (if available)
TreeFam:
Gene Tree for APOOP3 (if available)

No data available for Orthologs for APOOP3 Gene

Paralogs for APOOP3 Gene

No data available for Paralogs for APOOP3 Gene

Variants for APOOP3 Gene

Additional Variant Information for APOOP3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
APOOP3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for APOOP3 Gene

Disorders for APOOP3 Gene

No disorders were found for APOOP3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for APOOP3 Gene

Publications for APOOP3 Gene

No publications were found for APOOP3 Gene.

No data available for Mastermind for APOOP3 Gene

Products for APOOP3 Gene

Sources for APOOP3 Gene