Aliases for APOOP1 Gene

Aliases for APOOP1 Gene

  • Apolipoprotein O Pseudogene 1 2 3 5
  • APOOP1 5

External Ids for APOOP1 Gene

Previous GeneCards Identifiers for APOOP1 Gene

  • GC05P156351

Summaries for APOOP1 Gene

GeneCards Summary for APOOP1 Gene

APOOP1 (Apolipoprotein O Pseudogene 1) is a Pseudogene.

Additional gene information for APOOP1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for APOOP1 Gene

Genomics for APOOP1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for APOOP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J156921 Enhancer 0.9 Ensembl dbSUPER 617.5 -1.7 -1688 1.2 CREB1 LARP7 RELA IKZF2 YY1 PKNOX1 POLR2A DPF2 RELB GATAD2B APOOP1 lnc-PPP1R2B-3 TIMD4 lnc-PPP1R2B-2 PPP1R2B
GH05J156926 Enhancer 1 Ensembl ENCODE dbSUPER 18.6 +5.5 5512 5.6 POLR2A TCF12 IKZF2 EED ARID3A RUNX3 BCLAF1 ARNT IKZF1 EBF1 APOOP1 piR-57135-021 lnc-PPP1R2B-3 TIMD4 PPP1R2B
GH05J156919 Enhancer 1.1 Ensembl ENCODE dbSUPER 15.2 -3.3 -3323 1.7 BACH1 STAT3 JUND RELA TCF12 IKZF2 TRIM22 EED ARID3A DPF2 APOOP1 TIMD4 lnc-PPP1R2B-2 PPP1R2B
GH05J157048 Enhancer 1.1 FANTOM5 Ensembl ENCODE 12.6 +125.6 125634 2.7 RXRB REST CEBPA CEBPB SP1 ATF3 TEAD1 JUND USF2 FOSL2 lnc-HAVCR2-1 HAVCR1 APOOP1 RF00017-5042 TIMD4
GH05J157034 Enhancer 0.6 Ensembl 14 +110.5 110511 1.2 TFE3 RXRB SOX13 SP1 NR3C1 FOXA2 FOXP1 SAP130 DRAP1 RARA APOOP1 HAVCR1 MF281430-064 lnc-HAVCR2-1 TIMD4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around APOOP1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for APOOP1 Gene

Genomic Locations for APOOP1 Gene
chr5:156,924,089-156,924,999
(GRCh38/hg38)
Size:
911 bases
Orientation:
Plus strand
chr5:156,351,101-156,352,014
(GRCh37/hg19)
Size:
914 bases
Orientation:
Plus strand

Genomic View for APOOP1 Gene

Genes around APOOP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
APOOP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for APOOP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for APOOP1 Gene

Proteins for APOOP1 Gene

Post-translational modifications for APOOP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for APOOP1 Gene

Domains & Families for APOOP1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for APOOP1 Gene

Function for APOOP1 Gene

Phenotypes From GWAS Catalog for APOOP1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for APOOP1 Gene

Localization for APOOP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for APOOP1 Gene

Pathways & Interactions for APOOP1 Gene

PathCards logo

SuperPathways for APOOP1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for APOOP1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for APOOP1 Gene

Drugs & Compounds for APOOP1 Gene

No Compound Related Data Available

Transcripts for APOOP1 Gene

mRNA/cDNA for APOOP1 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for APOOP1 Gene

No ASD Table

Relevant External Links for APOOP1 Gene

GeneLoc Exon Structure for
APOOP1

Expression for APOOP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for APOOP1 Gene

mRNA differential expression in normal tissues according to GTEx for APOOP1 Gene

This gene is overexpressed in Testis (x40.0), Liver (x8.8), and Thyroid (x4.2).
genes like me logo Genes that share expression patterns with APOOP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for APOOP1 Gene

Orthologs for APOOP1 Gene

Evolution for APOOP1 Gene

ENSEMBL:
Gene Tree for APOOP1 (if available)
TreeFam:
Gene Tree for APOOP1 (if available)

No data available for Orthologs for APOOP1 Gene

Paralogs for APOOP1 Gene

No data available for Paralogs for APOOP1 Gene

Variants for APOOP1 Gene

Additional Variant Information for APOOP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
APOOP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for APOOP1 Gene

Disorders for APOOP1 Gene

No disorders were found for APOOP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for APOOP1 Gene

Publications for APOOP1 Gene

  1. An APOO Pseudogene on Chromosome 5q Is Associated With Low-Density Lipoprotein Cholesterol Levels. (PMID: 29593015) Montasser ME … Chang YC (Circulation 2018) 3

Products for APOOP1 Gene

Sources for APOOP1 Gene