Aliases for APOC1P1 Gene

Aliases for APOC1P1 Gene

  • Apolipoprotein C1 Pseudogene 1 2 3 5
  • Apolipoprotein C-I Pseudogene 1 2 3
  • LincRNA-APOC1P1-3 2 3
  • APOC1P1 5

External Ids for APOC1P1 Gene

Previous GeneCards Identifiers for APOC1P1 Gene

  • GC19U990003
  • GC19P045430

Summaries for APOC1P1 Gene

GeneCards Summary for APOC1P1 Gene

APOC1P1 (Apolipoprotein C1 Pseudogene 1) is a Pseudogene.

Additional gene information for APOC1P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for APOC1P1 Gene

Genomics for APOC1P1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for APOC1P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J044923 Promoter/Enhancer 1.5 FANTOM5 Ensembl ENCODE 610.5 -0.9 -859 4.1 SP1 HNRNPL CREB1 GATAD2A ATF7 REST TFE3 SOX13 IKZF1 NFKBIZ APOC1P1 ZNF180 ZNF45 CLASRP ZNF155 ZNF230 ZNF224 ZNF225 ZNF284 FBXO46
GH19J044889 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 4.4 -35.1 -35077 5.1 SP1 CREB1 GATAD2A ATF7 PRDM10 ZNF629 LEF1 SOX13 IKZF1 ZNF692 TOMM40 ENSG00000267282 NONHSAG026007.2 ZNF180 ZNF45 ZNF234 CLASRP ZNF224 ZNF155 FBXO46
GH19J045599 Promoter/Enhancer 0.8 Ensembl dbSUPER 4.6 +672.9 672898 1 ZBTB48 SPI1 PRDM10 ZNF398 SMARCA4 ZBTB12 EZH2 lnc-EML2-1 APOC1P1 GPR4 OPA3 lnc-VASP-1 VASP
GH19J044934 Enhancer 1.1 Ensembl ENCODE 0.4 +9.0 8973 2.9 HNRNPL GATAD2A REST TFE3 LEF1 SOX13 NFKBIZ RCOR2 RBFOX2 RXRB APOC2 APOC1 L13714-240 APOC1P1 APOC4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around APOC1P1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for APOC1P1 Gene

Genomic Locations for APOC1P1 Gene
chr19:44,926,803-44,931,386
(GRCh38/hg38)
Size:
4,584 bases
Orientation:
Plus strand
chr19:45,430,060-45,434,643
(GRCh37/hg19)
Size:
4,584 bases
Orientation:
Plus strand

Genomic View for APOC1P1 Gene

Genes around APOC1P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
APOC1P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for APOC1P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for APOC1P1 Gene

Proteins for APOC1P1 Gene

Post-translational modifications for APOC1P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for APOC1P1 Gene

Domains & Families for APOC1P1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for APOC1P1 Gene

Function for APOC1P1 Gene

Molecular function for APOC1P1 Gene

GENATLAS Biochemistry:
apolipoprotein C-I,pseudogene 1

Phenotypes From GWAS Catalog for APOC1P1 Gene

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for APOC1P1 Gene

Localization for APOC1P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for APOC1P1 Gene

Pathways & Interactions for APOC1P1 Gene

PathCards logo

SuperPathways for APOC1P1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for APOC1P1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for APOC1P1 Gene

Drugs & Compounds for APOC1P1 Gene

No Compound Related Data Available

Transcripts for APOC1P1 Gene

mRNA/cDNA for APOC1P1 Gene

5 NCBI additional mRNA sequence :
5 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for APOC1P1 Gene

No ASD Table

Relevant External Links for APOC1P1 Gene

GeneLoc Exon Structure for
APOC1P1

Expression for APOC1P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for APOC1P1 Gene

mRNA differential expression in normal tissues according to GTEx for APOC1P1 Gene

This gene is overexpressed in Liver (x45.7).

SOURCE GeneReport for Unigene cluster for APOC1P1 Gene:

Hs.729930
genes like me logo Genes that share expression patterns with APOC1P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for APOC1P1 Gene

Orthologs for APOC1P1 Gene

Evolution for APOC1P1 Gene

ENSEMBL:
Gene Tree for APOC1P1 (if available)
TreeFam:
Gene Tree for APOC1P1 (if available)

No data available for Orthologs for APOC1P1 Gene

Paralogs for APOC1P1 Gene

No data available for Paralogs for APOC1P1 Gene

Variants for APOC1P1 Gene

Structural Variations from Database of Genomic Variants (DGV) for APOC1P1 Gene

Variant ID Type Subtype PubMed ID
nsv509747 CNV insertion 20534489

Additional Variant Information for APOC1P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
APOC1P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for APOC1P1 Gene

Disorders for APOC1P1 Gene

Additional Disease Information for APOC1P1

No disorders were found for APOC1P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for APOC1P1 Gene

Publications for APOC1P1 Gene

  1. Long intergenic non-coding RNA APOC1P1-3 inhibits apoptosis by decreasing α-tubulin acetylation in breast cancer. (PMID: 27228351) Liao XH … Zhou P (Cell death & disease 2016) 2 3
  2. Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations. (PMID: 22359512) Demirkan A … EUROSPAN consortium (PLoS genetics 2012) 3 41
  3. Identification of Long Noncoding RNA APOC1P1 as an Oncogene in Clear Cell Renal Cell Carcinoma. (PMID: 31871500) Sun C … Zhang G (Disease markers 2019) 3
  4. Detection of two distinct forms of apoC-I in great apes. (PMID: 20209111) Puppione DL … Whitelegge JP (Comparative biochemistry and physiology. Part D, Genomics & proteomics 2010) 3
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

Products for APOC1P1 Gene

Sources for APOC1P1 Gene