Aliases for APOC1P1 Gene

Aliases for APOC1P1 Gene

  • Apolipoprotein C1 Pseudogene 1 2 3 5
  • Apolipoprotein C-I Pseudogene 1 2 3
  • LincRNA-APOC1P1-3 3

External Ids for APOC1P1 Gene

Previous GeneCards Identifiers for APOC1P1 Gene

  • GC19U990003
  • GC19P045430

Summaries for APOC1P1 Gene

GeneCards Summary for APOC1P1 Gene

APOC1P1 (Apolipoprotein C1 Pseudogene 1) is a Pseudogene.

Additional gene information for APOC1P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for APOC1P1 Gene

Genomics for APOC1P1 Gene

GeneHancer (GH) Regulatory Elements for APOC1P1 Gene

Promoters and enhancers for APOC1P1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J044923 Promoter/Enhancer 1.5 FANTOM5 Ensembl ENCODE 760.5 -0.9 -859 4.1 SP1 LCORL FOXA1 MLX RBPJ NR2F1 ATF1 NR2F6 CREB1 MIXL1 APOC1P1 SYMPK APOC2 ZNF227 APOC4 IGSF23 BCAM APOE APOC1 piR-56022-272
GH19J044889 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 4.4 -35.1 -35077 5.1 PPP1R10 ZNF785 SIN3A SP1 ZBTB40 FOXA1 RBPJ SMARCE1 POLR2A CEBPZ TOMM40 ENSG00000267282 NONHSAG026007.2 ZNF180 CLASRP ZNF45 ZNF155 FBXO46 SYMPK ZNF234
GH19J045599 Promoter/Enhancer 0.8 Ensembl dbSUPER 4.6 +672.9 672898 1 ZBTB48 PRDM10 ZNF398 ZBTB12 lnc-EML2-1 APOC1P1 GPR4 OPA3 lnc-VASP-1
GH19J044934 Enhancer 1.1 Ensembl ENCODE 0.4 +9.0 8973 2.9 LCORL FOXA1 MLX RBPJ NR2F1 NR2F6 CREB1 MIXL1 NFYC RAD21 APOC2 APOC1 L13714-244 APOC1P1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around APOC1P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for APOC1P1 Gene

Genomic Locations for APOC1P1 Gene
4,584 bases
Plus strand
4,584 bases
Plus strand

Genomic View for APOC1P1 Gene

Genes around APOC1P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
APOC1P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for APOC1P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for APOC1P1 Gene

Proteins for APOC1P1 Gene

Post-translational modifications for APOC1P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for APOC1P1 Gene

Domains & Families for APOC1P1 Gene

Gene Families for APOC1P1 Gene

genes like me logo Genes that share domains with APOC1P1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for APOC1P1 Gene

Function for APOC1P1 Gene

Molecular function for APOC1P1 Gene

GENATLAS Biochemistry:
apolipoprotein C-I,pseudogene 1

Phenotypes From GWAS Catalog for APOC1P1 Gene

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for APOC1P1 Gene

Localization for APOC1P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for APOC1P1 Gene

Pathways & Interactions for APOC1P1 Gene

PathCards logo

SuperPathways for APOC1P1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for APOC1P1 Gene


No data available for Pathways by source and SIGNOR curated interactions for APOC1P1 Gene

Drugs & Compounds for APOC1P1 Gene

No Compound Related Data Available

Transcripts for APOC1P1 Gene

mRNA/cDNA for APOC1P1 Gene

(5) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for APOC1P1 Gene

No ASD Table

Relevant External Links for APOC1P1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for APOC1P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for APOC1P1 Gene

mRNA differential expression in normal tissues according to GTEx for APOC1P1 Gene

This gene is overexpressed in Liver (x45.7).

NURSA nuclear receptor signaling pathways regulating expression of APOC1P1 Gene:


SOURCE GeneReport for Unigene cluster for APOC1P1 Gene:

genes like me logo Genes that share expression patterns with APOC1P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for APOC1P1 Gene

Orthologs for APOC1P1 Gene

Evolution for APOC1P1 Gene

Gene Tree for APOC1P1 (if available)
Gene Tree for APOC1P1 (if available)

No data available for Orthologs for APOC1P1 Gene

Paralogs for APOC1P1 Gene

No data available for Paralogs for APOC1P1 Gene

Variants for APOC1P1 Gene

Sequence variations from dbSNP and Humsavar for APOC1P1 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000458922 -- 44,928,468(+) A/G intron_variant
rs1001116960 -- 44,926,448(+) GGGGGGG/GGGGGG/GGGGGGGG upstream_transcript_variant
rs1002558782 -- 44,926,653(+) C/T upstream_transcript_variant
rs1002782774 -- 44,931,452(+) G/A downstream_transcript_variant
rs1003189847 -- 44,926,805(+) A/G/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for APOC1P1 Gene

Variant ID Type Subtype PubMed ID
nsv509747 CNV insertion 20534489

Additional Variant Information for APOC1P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for APOC1P1 Gene

Disorders for APOC1P1 Gene

Additional Disease Information for APOC1P1

No disorders were found for APOC1P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for APOC1P1 Gene

Publications for APOC1P1 Gene

  1. Long intergenic non-coding RNA APOC1P1-3 inhibits apoptosis by decreasing α-tubulin acetylation in breast cancer. (PMID: 27228351) Liao XH … Zhou P (Cell death & disease 2016) 2 3 56
  2. Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations. (PMID: 22359512) Demirkan A … EUROSPAN consortium (PLoS genetics 2012) 3 43 56
  3. Detection of two distinct forms of apoC-I in great apes. (PMID: 20209111) Puppione DL … Whitelegge JP (Comparative biochemistry and physiology. Part D, Genomics & proteomics 2010) 3 56
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56
  5. Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. (PMID: 16712791) Wang AG … Kim NS (Biochemical and biophysical research communications 2006) 3 56

Products for APOC1P1 Gene

Sources for APOC1P1 Gene