Aliases for APOBEC3B-AS1 Gene

Subcategory (RNA class) for APOBEC3B-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for APOBEC3B-AS1 Gene

  • APOBEC3B Antisense RNA 1 2 3 5
  • APOBEC3B Antisense RNA 1 (Non-Protein Coding) 2 3
  • APOBEC3B-AS1 2 168
  • HSALNG0135464 167
  • NONHSAG033947 92
  • CTA-150C2.16 3

External Ids for APOBEC3B-AS1 Gene

Previous GeneCards Identifiers for APOBEC3B-AS1 Gene

  • GC22M039388
  • GC22M039468
  • GC22M040103
  • GC22M039079
  • GC22M039827
  • GC22M042768
  • GC22M042883
  • GC22M042940
  • GC22M039826
  • GC22M039938
  • GC22M040626
  • GC22M041073
  • GC22M041472
  • GC22M041880
  • GC22M042309
  • GC22M042660

Summaries for APOBEC3B-AS1 Gene

GeneCards Summary for APOBEC3B-AS1 Gene

APOBEC3B-AS1 (APOBEC3B Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for APOBEC3B-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for APOBEC3B-AS1 Gene

Genomics for APOBEC3B-AS1 Gene

GeneHancer (GH) Regulatory Elements for APOBEC3B-AS1 Gene

Promoters and enhancers for APOBEC3B-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J038998 Promoter 0.3 Ensembl 500.7 -0.2 -181 0.8 APOBEC3B-AS1 CBY1 piR-33211-004
GH22J038997 Enhancer 0.3 Ensembl 500.7 +0.8 819 0.4 ZNF366 APOBEC3B-AS1 APOBEC3B
GH22J038869 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.6 +126.1 126072 4.6 EP300 CTCF SIN3A NRF1 POLR2G USF1 SP1 GTF2E2 PHF8 ZFX CBX6 lnc-APOBEC3A-3 TAB1 APOBEC3B-AS1 CBX7 ENSG00000235209 SUN2 APOBEC3G GTPBP1 JOSD1
GH22J038951 Promoter/Enhancer 1.9 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.4 +44.8 44790 4.9 SP1 RELA RCOR1 POLR2A CREB1 CTCF SRF CEBPB NBN USF1 APOBEC3A lnc-APOBEC3A-2 lnc-CBX6-2 APOBEC3B SUN2 GTPBP1 APOBEC3B-AS1 DNAL4 JOSD1 APOBEC3D
GH22J039076 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 11.1 -81.3 -81316 6.9 ZIC2 ZNF263 POLR2A ZBTB17 NFXL1 POLR2G MEF2B NBN ZFHX2 ELF1 APOBEC3G APOBEC3B-AS1 LOC101927202
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around APOBEC3B-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for APOBEC3B-AS1 Gene

Genomic Locations for APOBEC3B-AS1 Gene
chr22:38,991,559-38,998,220
(GRCh38/hg38)
Size:
6,662 bases
Orientation:
Minus strand
chr22:39,387,564-39,394,214
(GRCh37/hg19)
Size:
6,651 bases
Orientation:
Minus strand

Genomic View for APOBEC3B-AS1 Gene

Genes around APOBEC3B-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
APOBEC3B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for APOBEC3B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for APOBEC3B-AS1 Gene

Proteins for APOBEC3B-AS1 Gene

Post-translational modifications for APOBEC3B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for APOBEC3B-AS1 Gene

Domains & Families for APOBEC3B-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for APOBEC3B-AS1 Gene

Function for APOBEC3B-AS1 Gene

Phenotypes From GWAS Catalog for APOBEC3B-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for APOBEC3B-AS1 Gene

Localization for APOBEC3B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for APOBEC3B-AS1 Gene

Pathways & Interactions for APOBEC3B-AS1 Gene

PathCards logo

SuperPathways for APOBEC3B-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for APOBEC3B-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for APOBEC3B-AS1 Gene

Drugs & Compounds for APOBEC3B-AS1 Gene

No Compound Related Data Available

Transcripts for APOBEC3B-AS1 Gene

mRNA/cDNA for APOBEC3B-AS1 Gene

3 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
1 LncBook transcripts :
2 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for APOBEC3B-AS1 Gene

No ASD Table

Relevant External Links for APOBEC3B-AS1 Gene

GeneLoc Exon Structure for
APOBEC3B-AS1

Expression for APOBEC3B-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for APOBEC3B-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for APOBEC3B-AS1 Gene

This gene is overexpressed in Whole Blood (x22.1).
genes like me logo Genes that share expression patterns with APOBEC3B-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for APOBEC3B-AS1 Gene

Orthologs for APOBEC3B-AS1 Gene

Evolution for APOBEC3B-AS1 Gene

ENSEMBL:
Gene Tree for APOBEC3B-AS1 (if available)
TreeFam:
Gene Tree for APOBEC3B-AS1 (if available)

No data available for Orthologs for APOBEC3B-AS1 Gene

Paralogs for APOBEC3B-AS1 Gene

No data available for Paralogs for APOBEC3B-AS1 Gene

Variants for APOBEC3B-AS1 Gene

Additional dbSNP identifiers (rs#s) for APOBEC3B-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for APOBEC3B-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv172n111 CNV deletion 26073780
dgv36n47 CNV loss 21111241
dgv4568n100 CNV loss 25217958
dgv4569n100 CNV loss 25217958
dgv4571n100 CNV loss 25217958
dgv770n67 CNV loss 20364138
dgv8106n54 CNV loss 21841781
dgv8107n54 CNV loss 21841781
dgv833e199 CNV deletion 23128226
esv2495318 CNV deletion 19546169
esv2604392 CNV loss 19546169
esv2724238 CNV deletion 23290073
esv2760711 CNV loss 21179565
esv2763703 CNV loss 21179565
esv28999 CNV loss 19812545
esv29947 CNV loss 18421352
esv33846 CNV gain+loss 17666407
esv3568392 CNV loss 25503493
esv3584501 CNV gain 24956385
esv3584781 CNV loss 24956385
esv3647746 CNV loss 21293372
esv3647747 CNV loss 21293372
esv3647748 CNV gain 21293372
esv3647751 CNV gain 21293372
nsv1055716 CNV loss 25217958
nsv1056597 CNV loss 25217958
nsv1061176 CNV gain+loss 25217958
nsv1144025 CNV deletion 24896259
nsv198 CNV deletion 15895083
nsv3627 CNV deletion 18451855
nsv472943 CNV novel sequence insertion 20440878
nsv482077 CNV gain 20164927
nsv589021 CNV loss 21841781
nsv589031 CNV loss 21841781
nsv829221 CNV loss 20364138
nsv834196 CNV loss 17160897
nsv964630 OTHER complex 23825009
nsv979675 CNV duplication 23825009
nsv9907 CNV loss 18304495
nsv9908 CNV loss 18304495

Additional Variant Information for APOBEC3B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
APOBEC3B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for APOBEC3B-AS1 Gene

Disorders for APOBEC3B-AS1 Gene

Additional Disease Information for APOBEC3B-AS1

No disorders were found for APOBEC3B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for APOBEC3B-AS1 Gene

Publications for APOBEC3B-AS1 Gene

No publications were found for APOBEC3B-AS1 Gene.

No data available for Mastermind for APOBEC3B-AS1 Gene

Products for APOBEC3B-AS1 Gene

Sources for APOBEC3B-AS1 Gene