Free for academic non-profit institutions. Other users need a Commercial license

Aliases for APOBEC3B-AS1 Gene

Subcategory (RNA class) for APOBEC3B-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for APOBEC3B-AS1 Gene

  • APOBEC3B Antisense RNA 1 2 3 5
  • APOBEC3B Antisense RNA 1 (Non-Protein Coding) 2 3
  • CTA-150C2.16 3

External Ids for APOBEC3B-AS1 Gene

Previous GeneCards Identifiers for APOBEC3B-AS1 Gene

  • GC22M039388
  • GC22M039468
  • GC22M040103
  • GC22M039079
  • GC22M039827
  • GC22M039826
  • GC22M039938
  • GC22M040626
  • GC22M041073
  • GC22M041472
  • GC22M041880

Summaries for APOBEC3B-AS1 Gene

GeneCards Summary for APOBEC3B-AS1 Gene

APOBEC3B-AS1 (APOBEC3B Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for APOBEC3B-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for APOBEC3B-AS1 Gene

Genomics for APOBEC3B-AS1 Gene

GeneHancer (GH) Regulatory Elements for APOBEC3B-AS1 Gene

Promoters and enhancers for APOBEC3B-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J038869 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.6 +126.1 126072 4.6 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 IRF4 YY1 CBX6 APOBEC3B-AS1 ENSG00000235209 SUN2 APOBEC3G GTPBP1 JOSD1 APOBEC3H NPTXR
GH22J039076 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 11.1 -81.1 -81064 6.4 HDGF PKNOX1 BACH1 EBF1 NFXL1 ZIC2 ZFHX2 EGR1 POLR2A ZFP91 APOBEC3G DDX17 JOSD1 TNRC6B RPL3 APOBEC3B-AS1 SNORD83B TAB1 PLA2G6 LOC101927202
GH22J038951 Promoter/Enhancer 2 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.4 +44.8 44790 4.9 HDGF CTCF PKNOX1 RFX5 RELA POLR2A STAT2 ZNF143 ATF7 IKZF2 APOBEC3A APOBEC3B SUN2 GTPBP1 APOBEC3B-AS1 DNAL4 JOSD1 APOBEC3D DDX17 LOC105373033
GH22J038966 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 12 +30.9 30871 2 CTCF HDAC1 MEIS2 ATF1 PKNOX1 CTBP1 ZNF547 ATF7 MAFK IKZF2 DDX17 JOSD1 APOBEC3A GTPBP1 SUN2 APOBEC3B-AS1 RPL3 SNORD83B TAB1 PLA2G6
GH22J038957 Promoter/Enhancer 1.4 EPDnew Ensembl dbSUPER 11.9 +40.0 39968 2.3 CTCF ZNF777 ZNF493 YBX1 ZNF514 ZNF664 ZNF316 ZNF366 MAFK ZBTB2 APOBEC3A APOBEC3B DDX17 CBY1 TAB1 ENSG00000228274 CSNK1E APOBEC3B-AS1 SNORD83B SNORD83A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around APOBEC3B-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for APOBEC3B-AS1 Gene

Genomic Locations for APOBEC3B-AS1 Gene
chr22:38,991,559-38,998,220
(GRCh38/hg38)
Size:
6,662 bases
Orientation:
Minus strand
chr22:39,387,564-39,394,214
(GRCh37/hg19)
Size:
6,651 bases
Orientation:
Minus strand

Genomic View for APOBEC3B-AS1 Gene

Genes around APOBEC3B-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
APOBEC3B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for APOBEC3B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for APOBEC3B-AS1 Gene

Proteins for APOBEC3B-AS1 Gene

Post-translational modifications for APOBEC3B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for APOBEC3B-AS1 Gene

Domains & Families for APOBEC3B-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for APOBEC3B-AS1 Gene

Function for APOBEC3B-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for APOBEC3B-AS1 Gene

Localization for APOBEC3B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for APOBEC3B-AS1 Gene

Pathways & Interactions for APOBEC3B-AS1 Gene

SuperPathways for APOBEC3B-AS1 Gene

No Data Available

Interacting Proteins for APOBEC3B-AS1 Gene

Gene Ontology (GO) - Biological Process for APOBEC3B-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for APOBEC3B-AS1 Gene

Drugs & Compounds for APOBEC3B-AS1 Gene

No Compound Related Data Available

Transcripts for APOBEC3B-AS1 Gene

mRNA/cDNA for APOBEC3B-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for APOBEC3B-AS1 Gene

No ASD Table

Relevant External Links for APOBEC3B-AS1 Gene

GeneLoc Exon Structure for
APOBEC3B-AS1
ECgene alternative splicing isoforms for
APOBEC3B-AS1

Expression for APOBEC3B-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for APOBEC3B-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for APOBEC3B-AS1 Gene

This gene is overexpressed in Whole Blood (x22.1).
genes like me logo Genes that share expression patterns with APOBEC3B-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for APOBEC3B-AS1 Gene

Orthologs for APOBEC3B-AS1 Gene

Evolution for APOBEC3B-AS1 Gene

ENSEMBL:
Gene Tree for APOBEC3B-AS1 (if available)
TreeFam:
Gene Tree for APOBEC3B-AS1 (if available)

No data available for Orthologs for APOBEC3B-AS1 Gene

Paralogs for APOBEC3B-AS1 Gene

No data available for Paralogs for APOBEC3B-AS1 Gene

Variants for APOBEC3B-AS1 Gene

Sequence variations from dbSNP and Humsavar for APOBEC3B-AS1 Gene

SNP ID Clin Chr 22 pos Variation AA Info Type
rs1000222988 -- 38,995,426(-) G/C intron_variant
rs1000557398 -- 38,996,533(-) G/T intron_variant
rs1000947215 -- 38,991,436(-) T/C downstream_transcript_variant
rs1003760315 -- 38,997,804(-) C/G intron_variant
rs1003802664 -- 38,998,282(-) G/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for APOBEC3B-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv172n111 CNV deletion 26073780
dgv36n47 CNV loss 21111241
dgv4568n100 CNV loss 25217958
dgv4569n100 CNV loss 25217958
dgv4571n100 CNV loss 25217958
dgv770n67 CNV loss 20364138
dgv8106n54 CNV loss 21841781
dgv8107n54 CNV loss 21841781
dgv833e199 CNV deletion 23128226
esv2495318 CNV deletion 19546169
esv2604392 CNV loss 19546169
esv2724238 CNV deletion 23290073
esv2760711 CNV loss 21179565
esv2763703 CNV loss 21179565
esv28999 CNV loss 19812545
esv29947 CNV loss 18421352
esv33846 CNV gain+loss 17666407
esv3568392 CNV loss 25503493
esv3584501 CNV gain 24956385
esv3584781 CNV loss 24956385
esv3647746 CNV loss 21293372
esv3647747 CNV loss 21293372
esv3647748 CNV gain 21293372
esv3647751 CNV gain 21293372
nsv1055716 CNV loss 25217958
nsv1056597 CNV loss 25217958
nsv1061176 CNV gain+loss 25217958
nsv1144025 CNV deletion 24896259
nsv198 CNV deletion 15895083
nsv3627 CNV deletion 18451855
nsv472943 CNV novel sequence insertion 20440878
nsv482077 CNV gain 20164927
nsv589021 CNV loss 21841781
nsv589031 CNV loss 21841781
nsv829221 CNV loss 20364138
nsv834196 CNV loss 17160897
nsv964630 OTHER complex 23825009
nsv979675 CNV duplication 23825009
nsv9907 CNV loss 18304495
nsv9908 CNV loss 18304495

Additional Variant Information for APOBEC3B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
APOBEC3B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for APOBEC3B-AS1 Gene

Disorders for APOBEC3B-AS1 Gene

Additional Disease Information for APOBEC3B-AS1

No disorders were found for APOBEC3B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for APOBEC3B-AS1 Gene

Publications for APOBEC3B-AS1 Gene

No publications were found for APOBEC3B-AS1 Gene.

Products for APOBEC3B-AS1 Gene

Sources for APOBEC3B-AS1 Gene

Content
Loading form....