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Aliases for APOA1-AS Gene
Subcategory (RNA class) for APOA1-AS Gene
lncRNA
Number of RNA Genes sources:
2 / 14
External Ids for APOA1-AS Gene
- HGNC: 40079
- Entrez Gene: 104326055
- Ensembl: ENSG00000235910
Previous GeneCards Identifiers for APOA1-AS Gene
- GC00U934920
Summaries for APOA1-AS Gene
GeneCards Summary for APOA1-AS Gene
APOA1-AS (APOA1 Antisense RNA) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with APOA1-AS include Tangier Disease.
Additional gene information for APOA1-AS Gene
- Monarch Initiative
- Search for APOA1-AS at DataMed
- Search for APOA1-AS at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for APOA1-AS Gene
Genomics for APOA1-AS Gene
GeneHancer (GH) Regulatory Elements for APOA1-AS Gene
Promoters and enhancers for APOA1-AS Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around APOA1-AS on UCSC Golden Path with GeneCards custom track
Genomic Locations for APOA1-AS Gene
Genomic Locations for APOA1-AS Gene
- chr11:116,836,116-116,856,018
- (GRCh38/hg38)
- Size:
- 19,903 bases
- Orientation:
- Plus strand
Genomic View for APOA1-AS Gene
Genes around APOA1-AS on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 11q23.3 by HGNC
- 11q23.3 by Entrez Gene
- 11q23.3 by Ensembl
APOA1-AS Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for APOA1-AS Gene
Proteins for APOA1-AS Gene
Post-translational modifications for APOA1-AS Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for APOA1-AS
- Origene Custom Protein Services for APOA1-AS
No data available for DME Specific Peptides for APOA1-AS Gene
Domains & Families for APOA1-AS Gene
Gene Families for APOA1-AS Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for APOA1-AS Gene
Function for APOA1-AS Gene
Phenotypes From GWAS Catalog for APOA1-AS Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for APOA1-AS Gene
Localization for APOA1-AS Gene
| Compartment | Confidence |
|---|---|
| extracellular | 1 |
| nucleus | 1 |
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for APOA1-AS Gene
Transcripts for APOA1-AS Gene
mRNA/cDNA for APOA1-AS Gene
- 4 RNACentral transcripts :
- 1 REFSEQ mRNAs :
- 1 NCBI additional mRNA sequence :
- 2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000444200 563 bps (ENST00000444200.1)
- ENST00000669664 956 bps (ENST00000669664.1)
- 2 NONCODE transcripts :
- 3 LncBook transcripts :
CRISPR Products
- Browse CRISPR knockouts for APOA1-AS
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for APOA1-AS Gene
- GeneLoc Exon Structure for
- APOA1-AS
Expression for APOA1-AS Gene
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for APOA1-AS Gene
Orthologs for APOA1-AS Gene
No data available for Orthologs for APOA1-AS Gene
Paralogs for APOA1-AS Gene
No data available for Paralogs for APOA1-AS Gene
Variants for APOA1-AS Gene
Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for APOA1-AS Gene
| SNP ID | Clinical significance and condition | Chr 11 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| 636899 | Pathogenic: not provided | 116,836,218(+) | ACTT/A | NON_CODING_TRANSCRIPT_VARIANT,INFRAME_DELETION | |
| rs121912716 | Pathogenic: APOLIPOPROTEIN A-I (MARBURG) | 116,836,221(+) | T/A | NONSENSE,NON_CODING_TRANSCRIPT_VARIANT | |
| rs121912718 | Pathogenic: APOLIPOPROTEIN A-I (NORWAY) | 116,836,134(+) | C/T | MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT | |
| rs121912720 | Pathogenic: APOLIPOPROTEIN A-I (MUNSTER3C) | 116,837,121(+) | G/C | MISSENSE_VARIANT,INTRON_VARIANT | |
| rs121912721 | Pathogenic: APOLIPOPROTEIN A-I (MUNSTER3B) | 116,837,118(+) | G/C | MISSENSE_VARIANT,INTRON_VARIANT |
Additional Variant Information for APOA1-AS Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- APOA1-AS
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for APOA1-AS Gene
Disorders for APOA1-AS Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| tangier disease |
|
|
Search APOA1-AS in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for APOA1-AS
No data available for UniProtKB/Swiss-Prot and Genatlas for APOA1-AS Gene
Publications for APOA1-AS Gene
- Regulation of the apolipoprotein gene cluster by a long noncoding RNA. (PMID: 24388749) Halley P … Wahlestedt C (Cell reports 2014) 2 3 54
- Role of long non-coding RNAs expression (ANRIL, NOS3-AS, and APOA1-AS) in development of atherosclerosis in Egyptian systemic lupus erythematosus patients. (PMID: 30128915) Abd-Elmawla MA … Shaheen AA (Clinical rheumatology 2018) 3 54
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54
ExternalLinks
Products for APOA1-AS Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for APOA1-AS
- Origene Custom Protein Services for APOA1-AS
- Browse OriGene Inhibitory RNA Products For APOA1-AS
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for APOA1-AS
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For APOA1-AS
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for APOA1-AS
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for APOA1-AS
- Search GeneCopoeia for miRNA 3'UTR Target clone products for APOA1-AS
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for APOA1-AS
Sources for APOA1-AS Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) H-invDB
- (47) HORDE
- (48) HUGE
- (49) IMGT
- (50) Leiden
- (51) miRBase
- (52) DME
- (53) OriGene
- (54) PubMed
- (55) R&D Systems
- (56) TGDB
- (57) Tocris
- (58) Abcam
- (59) Novus Biologicals
- (60) ProSpec
- (61) Sino Biological
- (62) GenScript
- (63) Qiagen
- (64) OCA
- (65) Proteopedia
- (66) MOPED
- (67) neXtProt
- (68) Reactome
- (69) GeneGo (Thomson Reuters)
- (70) DISEASES
- (71) SIMAP
- (72) GenomeRNAi
- (73) LifeMap
- (74) miRTarBase
- (75) MalaCards
- (76) Invitrogen
- (77) BitterDB
- (78) ESI-BIO
- (79) RefSeq
- (80) BioSystems
- (81) MaxQB
- (82) IUPHAR
- (83) BioGPS
- (84) Illumina
- (85) COMPARTMENTS
- (86) HOMER
- (87) PaxDb
- (88) ApexBio
- (89) Addgene
- (90) antibodies-online
- (91) CYP
- (92) NONCODE
- (93) TreeFam
- (94) PathCards
- (95) GeneReviews
- (96) GeneTex
- (97) Taconic Biosciences
- (98) GTEx
- (99) ProteomicsDB
- (100) SCBT
- (101) DGIdb
- (102) ClinicalTrials
- (103) RVIS
- (104) SIGNOR
- (105) diseasecard
- (106) NIH Rare Diseases
- (107) Orphanet
- (108) UMLS
- (109) GTR
- (110) Disease Ontology
- (111) Genetics Home Reference
- (112) MeSH
- (113) MedlinePlus
- (114) CDC
- (115) NINDS
- (116) NCBI Bookshelf
- (117) ClinVar
- (118) Gene Damage Index
- (119) HPO
- (120) UDN
- (121) VISTA
- (122) FANTOM5
- (123) ENCODE
- (124) ProSci
- (125) Horizon
- (126) The Signaling Pathways Project (SPP)
- (127) IID
- (128) VectorBuilder
- (129) SNPedia
- (130) BRCA Exchange
- (131) CIViC
- (132) ProteoGenix
- (133) dbSUPER
- (134) TISSUES
- (135) Gene ORGANizer
- (136) abm
- (137) Human Protein Atlas
- (138) GWAS Catalog
- (139) Monarch Initiative
- (140) DataMed
- (141) HumanCyc
- (142) genomics-online
- (143) UCNEbase
- (144) EPDnew
- (145) Applied Biosystems
- (146) GlyConnect
- (147) Aminode
- (148) GeneCopoeia
- (149) GPS-Prot
- (150) RNACentral
- (151) LncRNADisease
- (152) LOVD
- (153) miR2Disease
- (154) DiseaseEnhancer
- (155) Boster Bio
- (156) Biorbyt
- (157) Biocompare
- (158) Mastermind
- (159) CTD^2 Dashboard
- (160) CraniofacialAtlas
- (161) GeneImprint
- (162) Synthego
- (163) Bio Basic
- (164) ENA
- (165) GtRNAdb
- (166) LncBase
- (167) LncBook
- (168) LNCipedia
- (169) LncRNAdb
- (170) Modomics
- (171) PDBe
- (172) Rfam
- (173) SILVA
- (174) snOPY
- (175) SRPDB
- (176) GENCODE
- (177) TarBase
- (178) MyBioSource