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APOA1-AS Gene(RNA Gene)

APOA1 Antisense RNA

GCID:
GC11P116836
GIFtS:
11
Genes Participants
UDN Logo

Aliases for APOA1-AS Gene

Subcategory (RNA class) for APOA1-AS Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for APOA1-AS Gene

  • APOA1 Antisense RNA 2 3 5

External Ids for APOA1-AS Gene

Previous GeneCards Identifiers for APOA1-AS Gene

  • GC00U934920

Summaries for APOA1-AS Gene

GeneCards Summary for APOA1-AS Gene

APOA1-AS (APOA1 Antisense RNA) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for APOA1-AS Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for APOA1-AS Gene

Genomics for APOA1-AS Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for APOA1-AS Gene

Promoters and enhancers for APOA1-AS Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11J116887 Enhancer 1 Ensembl ENCODE dbSUPER 11.7 +52.4 52353 2.2 FOXA2 RXRA RAD21 FOXA1 GABPA SP1 CEBPA RCOR2 HNF4A FOXP1 LOC653303 APOA1 APOA1-AS APOC3 APOA4 SIK3 ENSG00000224077 ENSG00000254678 PAFAH1B2 APOA5
GH11J117036 Enhancer 1.1 Ensembl ENCODE dbSUPER 10.5 +201.5 201536 1.5 ZNF146 INSM2 ZNF140 FEZF1 HIC1 ZNF121 ZNF366 SCRT2 ZNF600 TCF7L2 GC11M117036 RPS27P19 RNF214 APOA1 CEP164 LOC653303 BUD13 ENSG00000224077 SIK3 TAGLN
GH11J117092 Enhancer 1 ENCODE dbSUPER 10.5 +257.0 257017 1.1 FOXA2 BATF RAD21 RARA YY1 ATF7 IKZF2 CREM RUNX3 MIXL1 APOA1 APOA1-AS APOC3 APOA4 PCSK7 RNF214 TAGLN SIK3 GC11M117070
GH11J116860 Enhancer 0.8 ENCODE dbSUPER 12.2 +25.5 25536 1.8 FOSL1 JUND ZNF766 L3MBTL2 JUN RCOR1 FOS MNT CHD2 APOA1 LOC653303 APOA1-AS APOC3 APOA4 ENSG00000224077 SIK3 APOA5 ZPR1 PCSK7
GH11J117039 Enhancer 0.9 ENCODE dbSUPER 10.5 +203.9 203863 0.2 MEIS2 ZBTB40 BATF ZNF316 NFE2 EGR2 SOX6 JUNB ZEB2 DPF2 ENSG00000224077 SIK3 APOA1-AS APOA4 APOC3 PCSK7 RNF214 RPS27P19 GC11M117070
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around APOA1-AS on UCSC Golden Path with GeneCards custom track

Genomic Locations for APOA1-AS Gene

Genomic Locations for APOA1-AS Gene
chr11:116,836,117-116,855,729
(GRCh38/hg38)
Size:
19,613 bases
Orientation:
Plus strand

Genomic View for APOA1-AS Gene

Genes around APOA1-AS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
APOA1-AS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for APOA1-AS Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for APOA1-AS Gene

Proteins for APOA1-AS Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for APOA1-AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for APOA1-AS Gene

Domains & Families for APOA1-AS Gene

Gene Families for APOA1-AS Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with APOA1-AS: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for APOA1-AS Gene

Function for APOA1-AS Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for APOA1-AS Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for APOA1-AS Gene

Localization for APOA1-AS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for APOA1-AS Gene

Pathways & Interactions for APOA1-AS Gene

SuperPathways for APOA1-AS Gene

PathCards logo More details on SuperPathways for APOA1-AS
No Data Available

Interacting Proteins for APOA1-AS Gene

Gene Ontology (GO) - Biological Process for APOA1-AS Gene

None

No data available for Pathways by source and SIGNOR curated interactions for APOA1-AS Gene

Drugs & Compounds for APOA1-AS Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for APOA1-AS Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for APOA1-AS Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for APOA1-AS Gene

No ASD Table

Relevant External Links for APOA1-AS Gene

GeneLoc Exon Structure for
APOA1-AS
ECgene alternative splicing isoforms for
APOA1-AS

Expression for APOA1-AS Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for APOA1-AS Gene

mRNA expression in normal human tissues for APOA1-AS Gene
mRNA expression by GTEx for APOA1-AS Gene
genes like me logo Genes that share expression patterns with APOA1-AS: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for APOA1-AS Gene

Orthologs for APOA1-AS Gene

Evolution for APOA1-AS Gene

ENSEMBL:
Gene Tree for APOA1-AS (if available)
TreeFam:
Gene Tree for APOA1-AS (if available)

No data available for Orthologs for APOA1-AS Gene

Paralogs for APOA1-AS Gene

No data available for Paralogs for APOA1-AS Gene

Variants for APOA1-AS Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for APOA1-AS Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs121912716 pathogenic, APOLIPOPROTEIN A-I (MARBURG) 116,836,221(+) T/A non_coding_transcript_variant
rs121912717 pathogenic, APOLIPOPROTEIN A-I (MUNSTER4) 116,835,948(+) C/A/T upstream_transcript_variant
rs121912718 pathogenic, APOLIPOPROTEIN A-I (NORWAY) 116,836,134(+) C/G/T non_coding_transcript_variant
rs121912719 pathogenic, APOLIPOPROTEIN A-I (GIESSEN) 116,836,112(+) G/C upstream_transcript_variant
rs121912720 pathogenic, APOLIPOPROTEIN A-I (MUNSTER3C) 116,837,121(+) G/C/T intron_variant

Additional Variant Information for APOA1-AS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
APOA1-AS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for APOA1-AS Gene

Disorders for APOA1-AS Gene

Additional Disease Information for APOA1-AS

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for APOA1-AS Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for APOA1-AS Gene

Publications for APOA1-AS Gene

  1. Regulation of the apolipoprotein gene cluster by a long noncoding RNA. (PMID: 24388749) Halley P … Wahlestedt C (Cell reports 2014) 2 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for APOA1-AS Gene

Sources for APOA1-AS Gene

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