Aliases for APOA1-AS Gene

Subcategory (RNA class) for APOA1-AS Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for APOA1-AS Gene

  • APOA1 Antisense RNA 2 3 5
  • APOA1-AS 2 5
  • NONHSAG009706.2 91
  • HSALNG0087416 164

External Ids for APOA1-AS Gene

Previous GeneCards Identifiers for APOA1-AS Gene

  • GC00U934920

Summaries for APOA1-AS Gene

GeneCards Summary for APOA1-AS Gene

APOA1-AS (APOA1 Antisense RNA) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with APOA1-AS include Tangier Disease.

Additional gene information for APOA1-AS Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for APOA1-AS Gene

Genomics for APOA1-AS Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for APOA1-AS Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around APOA1-AS on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for APOA1-AS Gene

Genomic Locations for APOA1-AS Gene
chr11:116,836,116-116,856,018
(GRCh38/hg38)
Size:
19,903 bases
Orientation:
Plus strand

Genomic View for APOA1-AS Gene

Genes around APOA1-AS on UCSC Golden Path with GeneCards custom track
APOA1-AS in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
APOA1-AS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for APOA1-AS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for APOA1-AS Gene

Proteins for APOA1-AS Gene

Post-translational modifications for APOA1-AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for APOA1-AS Gene

Domains & Families for APOA1-AS Gene

Gene Families for APOA1-AS Gene

genes like me logo Genes that share domains with APOA1-AS: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for APOA1-AS Gene

Function for APOA1-AS Gene

Phenotypes From GWAS Catalog for APOA1-AS Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for APOA1-AS Gene

Localization for APOA1-AS Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for APOA1-AS gene
Compartment Confidence
extracellular 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for APOA1-AS Gene

Pathways & Interactions for APOA1-AS Gene

PathCards logo

SuperPathways for APOA1-AS Gene

No Data Available

Gene Ontology (GO) - Biological Process for APOA1-AS Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for APOA1-AS Gene

Drugs & Compounds for APOA1-AS Gene

No Compound Related Data Available

Transcripts for APOA1-AS Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for APOA1-AS Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005069DC_9606 lncRNA 563 5

HGNC: 40079,

RefSeq: NR_126362,

Ensembl: ENST00000444200 (view in UCSC) ,

LncBook: HSALNT0181696,

NONCODE: NONHSAT024360.2,

URS0000EEB1C6_9606 lncRNA 956 1

Ensembl: ENST00000669664 (view in UCSC) ,

URS00009BFC1C_9606 lncRNA 563 2

LncBook: HSALNT0181697,

NONCODE: NONHSAT159724.1,

URS0000E97C59_9606 lncRNA 565 1

LncBook: HSALNT0289460,

APOA1-AS in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for APOA1-AS Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for APOA1-AS Gene

No ASD Table

Relevant External Links for APOA1-AS Gene

GeneLoc Exon Structure for
APOA1-AS

Expression for APOA1-AS Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for APOA1-AS Gene

genes like me logo Genes that share expression patterns with APOA1-AS: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for APOA1-AS Gene

Orthologs for APOA1-AS Gene

Evolution for APOA1-AS Gene

ENSEMBL:
Gene Tree for APOA1-AS (if available)
TreeFam:
Gene Tree for APOA1-AS (if available)

No data available for Orthologs for APOA1-AS Gene

Paralogs for APOA1-AS Gene

No data available for Paralogs for APOA1-AS Gene

Variants for APOA1-AS Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for APOA1-AS Gene

SNP ID Clinical significance and condition Chr 11 pos Variation AA Info Type
636899 Conflicting Interpretations: Chronic kidney disease; not provided 116,836,218(+) ACTT/A NON_CODING_TRANSCRIPT_VARIANT,INFRAME_DELETION
734267 Benign: not provided 116,849,225(+) C/T SYNONYMOUS_VARIANT
734624 Likely Benign: not provided 116,836,285(+) C/T SYNONYMOUS_VARIANT,FIVE_PRIME_UTR_VARIANT
757032 Likely Benign: not provided 116,836,129(+) C/G NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT
877657 Uncertain Significance: Familial visceral amyloidosis, Ostertag type; Familial hypoalphalipoproteinemia 116,837,613(+) C/T FIVE_PRIME_UTR_VARIANT

Additional dbSNP identifiers (rs#s) for APOA1-AS Gene

Additional Variant Information for APOA1-AS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
APOA1-AS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for APOA1-AS Gene

Disorders for APOA1-AS Gene

MalaCards: The human disease database

(1) MalaCards diseases for APOA1-AS Gene - From: GeneCards

Disorder Aliases PubMed IDs
tangier disease
  • tgd
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with APOA1-AS: view

No data available for UniProtKB/Swiss-Prot and Genatlas for APOA1-AS Gene

Publications for APOA1-AS Gene

  1. Regulation of the apolipoprotein gene cluster by a long noncoding RNA. (PMID: 24388749) Halley P … Wahlestedt C (Cell reports 2014) 2 3
  2. Role of long non-coding RNAs expression (ANRIL, NOS3-AS, and APOA1-AS) in development of atherosclerosis in Egyptian systemic lupus erythematosus patients. (PMID: 30128915) Abd-Elmawla MA … Shaheen AA (Clinical rheumatology 2018) 3
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

Products for APOA1-AS Gene

Sources for APOA1-AS Gene