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Aliases for APOA1-AS Gene
Subcategory (RNA class) for APOA1-AS Gene
lncRNA
Number of RNA Genes sources:
2 / 17
Aliases for APOA1-AS Gene
External Ids for APOA1-AS Gene
- HGNC: 40079
- Entrez Gene: 104326055
- Ensembl: ENSG00000235910
Previous GeneCards Identifiers for APOA1-AS Gene
- GC00U934920
Summaries for APOA1-AS Gene
GeneCards Summary for APOA1-AS Gene
APOA1-AS (APOA1 Antisense RNA) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with APOA1-AS include Tangier Disease.
Additional gene information for APOA1-AS Gene
- Monarch Initiative
- Search for APOA1-AS at DataMed
- Search for APOA1-AS at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for APOA1-AS Gene
Genomics for APOA1-AS Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for APOA1-AS Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around APOA1-AS on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for APOA1-AS Gene
Genomic Locations for APOA1-AS Gene
- chr11:116,836,116-116,856,018
- (GRCh38/hg38)
- Size:
- 19,903 bases
- Orientation:
- Plus strand
Genomic View for APOA1-AS Gene
Genes around APOA1-AS on UCSC Golden Path with GeneCards custom track
APOA1-AS in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 11q23.3 by HGNC
- 11q23.3 by Entrez Gene
- 11q23.3 by Ensembl
APOA1-AS Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for APOA1-AS Gene
Proteins for APOA1-AS Gene
Post-translational modifications for APOA1-AS Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for APOA1-AS
- Origene Custom Protein Services for APOA1-AS
No data available for DME Specific Peptides for APOA1-AS Gene
Domains & Families for APOA1-AS Gene
Gene Families for APOA1-AS Gene
- HGNC:
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for APOA1-AS Gene
Function for APOA1-AS Gene
Phenotypes From GWAS Catalog for APOA1-AS Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Browse CRISPR knockouts for APOA1-AS
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for APOA1-AS Gene
Localization for APOA1-AS Gene
| Compartment | Confidence |
|---|---|
| extracellular | 1 |
| nucleus | 1 |
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for APOA1-AS Gene
Transcripts for APOA1-AS Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for APOA1-AS Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS00005069DC_9606 | lncRNA | 563 | 5 |
HGNC: 40079, RefSeq: NR_126362, Ensembl: ENST00000444200 (view in UCSC) , LncBook: HSALNT0181696, NONCODE: NONHSAT024360.2, |
| URS0000EEB1C6_9606 | lncRNA | 956 | 1 |
Ensembl: ENST00000669664 (view in UCSC) , |
| URS00009BFC1C_9606 | lncRNA | 563 | 2 |
LncBook: HSALNT0181697, NONCODE: NONHSAT159724.1, |
| URS0000E97C59_9606 | lncRNA | 565 | 1 |
LncBook: HSALNT0289460, |
APOA1-AS in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for APOA1-AS Gene
- 1 NCBI additional mRNA sequence :
CRISPR Products
- Browse CRISPR knockouts for APOA1-AS
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for APOA1-AS Gene
- GeneLoc Exon Structure for
- APOA1-AS
Expression for APOA1-AS Gene
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for APOA1-AS Gene
Orthologs for APOA1-AS Gene
No data available for Orthologs for APOA1-AS Gene
Paralogs for APOA1-AS Gene
No data available for Paralogs for APOA1-AS Gene
Variants for APOA1-AS Gene
Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for APOA1-AS Gene
| SNP ID | Clinical significance and condition | Chr 11 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| 636899 | Conflicting Interpretations: Chronic kidney disease; not provided | 116,836,218(+) | ACTT/A | NON_CODING_TRANSCRIPT_VARIANT,INFRAME_DELETION | |
| 734267 | Benign: not provided | 116,849,225(+) | C/T | SYNONYMOUS_VARIANT | |
| 734624 | Likely Benign: not provided | 116,836,285(+) | C/T | SYNONYMOUS_VARIANT,FIVE_PRIME_UTR_VARIANT | |
| 757032 | Likely Benign: not provided | 116,836,129(+) | C/G | NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT | |
| 877657 | Uncertain Significance: Familial visceral amyloidosis, Ostertag type; Familial hypoalphalipoproteinemia | 116,837,613(+) | C/T | FIVE_PRIME_UTR_VARIANT |
Additional Variant Information for APOA1-AS Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- APOA1-AS
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for APOA1-AS Gene
Disorders for APOA1-AS Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| tangier disease |
|
|
Search APOA1-AS in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for APOA1-AS
No data available for UniProtKB/Swiss-Prot and Genatlas for APOA1-AS Gene
Publications for APOA1-AS Gene
- Regulation of the apolipoprotein gene cluster by a long noncoding RNA. (PMID: 24388749) Halley P … Wahlestedt C (Cell reports 2014) 2 3
- Role of long non-coding RNAs expression (ANRIL, NOS3-AS, and APOA1-AS) in development of atherosclerosis in Egyptian systemic lupus erythematosus patients. (PMID: 30128915) Abd-Elmawla MA … Shaheen AA (Clinical rheumatology 2018) 3
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
ExternalLinks
Products for APOA1-AS Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for APOA1-AS
- Origene Custom Protein Services for APOA1-AS
- Browse OriGene Inhibitory RNA Products For APOA1-AS
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for APOA1-AS
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For APOA1-AS
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for APOA1-AS
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for APOA1-AS
- Search GeneCopoeia for miRNA 3'UTR Target clone products for APOA1-AS
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for APOA1-AS
Sources for APOA1-AS Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB