Aliases for APOA1-AS Gene

Subcategory (RNA class) for APOA1-AS Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for APOA1-AS Gene

  • APOA1 Antisense RNA 2 3 5
  • HSALNG0087416 167
  • NONHSAG009706 92
  • APOA1-AS 2

External Ids for APOA1-AS Gene

Previous GeneCards Identifiers for APOA1-AS Gene

  • GC00U934920

Summaries for APOA1-AS Gene

GeneCards Summary for APOA1-AS Gene

APOA1-AS (APOA1 Antisense RNA) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with APOA1-AS include Tangier Disease.

Additional gene information for APOA1-AS Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for APOA1-AS Gene

Genomics for APOA1-AS Gene

GeneHancer (GH) Regulatory Elements for APOA1-AS Gene

Promoters and enhancers for APOA1-AS Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around APOA1-AS on UCSC Golden Path with GeneCards custom track

Genomic Locations for APOA1-AS Gene

Genomic Locations for APOA1-AS Gene
chr11:116,836,116-116,856,018
(GRCh38/hg38)
Size:
19,903 bases
Orientation:
Plus strand

Genomic View for APOA1-AS Gene

Genes around APOA1-AS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
APOA1-AS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for APOA1-AS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for APOA1-AS Gene

Proteins for APOA1-AS Gene

Post-translational modifications for APOA1-AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for APOA1-AS Gene

Domains & Families for APOA1-AS Gene

Gene Families for APOA1-AS Gene

genes like me logo Genes that share domains with APOA1-AS: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for APOA1-AS Gene

Function for APOA1-AS Gene

Phenotypes From GWAS Catalog for APOA1-AS Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for APOA1-AS Gene

Localization for APOA1-AS Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for APOA1-AS gene
Compartment Confidence
extracellular 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for APOA1-AS Gene

Pathways & Interactions for APOA1-AS Gene

PathCards logo

SuperPathways for APOA1-AS Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for APOA1-AS Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for APOA1-AS Gene

Drugs & Compounds for APOA1-AS Gene

No Compound Related Data Available

Transcripts for APOA1-AS Gene

mRNA/cDNA for APOA1-AS Gene

4 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
3 LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for APOA1-AS Gene

No ASD Table

Relevant External Links for APOA1-AS Gene

GeneLoc Exon Structure for
APOA1-AS

Expression for APOA1-AS Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for APOA1-AS Gene

genes like me logo Genes that share expression patterns with APOA1-AS: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for APOA1-AS Gene

Orthologs for APOA1-AS Gene

Evolution for APOA1-AS Gene

ENSEMBL:
Gene Tree for APOA1-AS (if available)
TreeFam:
Gene Tree for APOA1-AS (if available)

No data available for Orthologs for APOA1-AS Gene

Paralogs for APOA1-AS Gene

No data available for Paralogs for APOA1-AS Gene

Variants for APOA1-AS Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for APOA1-AS Gene

SNP ID Clinical significance and condition Chr 11 pos Variation AA Info Type
636899 Pathogenic: not provided 116,836,218(+) ACTT/A NON_CODING_TRANSCRIPT_VARIANT,INFRAME_DELETION
rs121912716 Pathogenic: APOLIPOPROTEIN A-I (MARBURG) 116,836,221(+) T/A NONSENSE,NON_CODING_TRANSCRIPT_VARIANT
rs121912718 Pathogenic: APOLIPOPROTEIN A-I (NORWAY) 116,836,134(+) C/T MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT
rs121912720 Pathogenic: APOLIPOPROTEIN A-I (MUNSTER3C) 116,837,121(+) G/C MISSENSE_VARIANT,INTRON_VARIANT
rs121912721 Pathogenic: APOLIPOPROTEIN A-I (MUNSTER3B) 116,837,118(+) G/C MISSENSE_VARIANT,INTRON_VARIANT

Additional dbSNP identifiers (rs#s) for APOA1-AS Gene

Additional Variant Information for APOA1-AS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
APOA1-AS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for APOA1-AS Gene

Disorders for APOA1-AS Gene

MalaCards: The human disease database

(1) MalaCards diseases for APOA1-AS Gene - From: GeneCards

Disorder Aliases PubMed IDs
tangier disease
  • tgd
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for APOA1-AS

genes like me logo Genes that share disorders with APOA1-AS: view

No data available for UniProtKB/Swiss-Prot and Genatlas for APOA1-AS Gene

Publications for APOA1-AS Gene

  1. Regulation of the apolipoprotein gene cluster by a long noncoding RNA. (PMID: 24388749) Halley P … Wahlestedt C (Cell reports 2014) 2 3 54
  2. Role of long non-coding RNAs expression (ANRIL, NOS3-AS, and APOA1-AS) in development of atherosclerosis in Egyptian systemic lupus erythematosus patients. (PMID: 30128915) Abd-Elmawla MA … Shaheen AA (Clinical rheumatology 2018) 3 54
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54

Products for APOA1-AS Gene

Sources for APOA1-AS Gene