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Aliases for APCDD1L-DT Gene

Subcategory (RNA class) for APCDD1L-DT Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for APCDD1L-DT Gene

  • APCDD1L Divergent Transcript 2 3
  • APCDD1L Antisense RNA 1 (Head To Head) 2 3 5
  • APCDD1L Antisense RNA 1 (Non-Protein Coding) 2 3
  • APCDD1L-AS1 3 5
  • APCDD1L Antisense RNA 1 2

External Ids for APCDD1L-DT Gene

Previous HGNC Symbols for APCDD1L-DT Gene

  • APCDD1L-AS1

Summaries for APCDD1L-DT Gene

GeneCards Summary for APCDD1L-DT Gene

APCDD1L-DT (APCDD1L Divergent Transcript) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for APCDD1L-DT Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for APCDD1L-DT Gene

Genomics for APCDD1L-DT Gene

GeneHancer (GH) Regulatory Elements for APCDD1L-DT Gene

Promoters and enhancers for APCDD1L-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J058515 Promoter/Enhancer 1.1 EPDnew dbSUPER 650.7 +0.0 40 0.1 SMARCE1 MAZ ZNF341 ZBTB33 MNT FOS KLF4 EZH2 APCDD1L APCDD1L-DT GC20M058516
GH20J058514 Promoter/Enhancer 1 EPDnew dbSUPER 650.7 -0.5 -472 0.1 ZNF341 CTBP2 KLF4 ZBTB26 EZH2 APCDD1L APCDD1L-DT GC20M058516 VAPB
GH20J058549 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 12 +35.1 35139 1.3 NFIB MAX ZIC2 RFX5 FOSL1 GATA3 VEZF1 HSF1 SMC3 RCOR1 APCDD1L APCDD1L-DT GC20M058516 ENSG00000254620
GH20J058541 Enhancer 1 Ensembl ENCODE dbSUPER 12 +26.7 26650 1.2 SMARCE1 PKNOX1 JUN CEBPB EP300 FOSL1 JUND EGR1 SMARCA4 VEZF1 APCDD1L APCDD1L-DT GC20M058516 ENSG00000254620
GH20J058372 Enhancer 1.2 Ensembl ENCODE 9.8 -140.9 -140893 4.2 HDGF ATF1 SIN3A ZNF48 ETS1 TCF12 ZNF207 ZNF143 RXRA MIER2 PPP4R1L ENSG00000254419 RAB22A ANKRD60 APCDD1L APCDD1L-DT VAPB PIR40663
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around APCDD1L-DT on UCSC Golden Path with GeneCards custom track

Genomic Locations for APCDD1L-DT Gene

Genomic Locations for APCDD1L-DT Gene
chr20:58,515,379-58,619,892
(GRCh38/hg38)
Size:
104,514 bases
Orientation:
Plus strand
chr20:57,090,435-57,194,948
(GRCh37/hg19)
Size:
104,514 bases
Orientation:
Plus strand

Genomic View for APCDD1L-DT Gene

Genes around APCDD1L-DT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
APCDD1L-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for APCDD1L-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for APCDD1L-DT Gene

Proteins for APCDD1L-DT Gene

Post-translational modifications for APCDD1L-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for APCDD1L-DT Gene

Domains & Families for APCDD1L-DT Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for APCDD1L-DT Gene

Function for APCDD1L-DT Gene

Phenotypes From GWAS Catalog for APCDD1L-DT Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for APCDD1L-DT Gene

Localization for APCDD1L-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for APCDD1L-DT Gene

Pathways & Interactions for APCDD1L-DT Gene

SuperPathways for APCDD1L-DT Gene

No Data Available

Interacting Proteins for APCDD1L-DT Gene

Gene Ontology (GO) - Biological Process for APCDD1L-DT Gene

None

No data available for Pathways by source and SIGNOR curated interactions for APCDD1L-DT Gene

Drugs & Compounds for APCDD1L-DT Gene

No Compound Related Data Available

Transcripts for APCDD1L-DT Gene

mRNA/cDNA for APCDD1L-DT Gene

(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(8) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for APCDD1L-DT Gene

No ASD Table

Relevant External Links for APCDD1L-DT Gene

GeneLoc Exon Structure for
APCDD1L-DT
ECgene alternative splicing isoforms for
APCDD1L-DT

Expression for APCDD1L-DT Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for APCDD1L-DT Gene

Orthologs for APCDD1L-DT Gene

Evolution for APCDD1L-DT Gene

ENSEMBL:
Gene Tree for APCDD1L-DT (if available)
TreeFam:
Gene Tree for APCDD1L-DT (if available)

No data available for Orthologs for APCDD1L-DT Gene

Paralogs for APCDD1L-DT Gene

No data available for Paralogs for APCDD1L-DT Gene

Variants for APCDD1L-DT Gene

Sequence variations from dbSNP and Humsavar for APCDD1L-DT Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000048865 -- 58,620,046(+) G/C downstream_transcript_variant
rs1000049400 -- 58,609,254(+) C/T intron_variant
rs1000055850 -- 58,574,287(+) C/T intron_variant
rs1000070711 -- 58,569,122(+) G/A intron_variant
rs1000071630 -- 58,587,513(+) G/C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for APCDD1L-DT Gene

Variant ID Type Subtype PubMed ID
nsv834019 CNV loss 17160897
nsv586351 CNV loss 21841781
nsv513551 CNV insertion 21212237
nsv3429 CNV insertion 18451855
nsv180089 CNV insertion 16902084
nsv179317 CNV deletion 16902084
nsv1117290 CNV tandem duplication 24896259
nsv1072549 CNV deletion 25765185
nsv1063462 CNV gain 25217958
esv3646224 CNV loss 21293372
esv3414478 CNV insertion 20981092
esv3376382 CNV insertion 20981092
esv3358083 CNV insertion 20981092
esv2722622 CNV deletion 23290073
esv2668602 CNV deletion 23128226
esv26473 CNV loss 19812545
esv2470822 CNV insertion 19546169
esv2117299 CNV deletion 18987734
esv1004047 CNV deletion 20482838
dgv2273n106 CNV deletion 24896259

Additional Variant Information for APCDD1L-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
APCDD1L-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for APCDD1L-DT Gene

Disorders for APCDD1L-DT Gene

Additional Disease Information for APCDD1L-DT

No disorders were found for APCDD1L-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for APCDD1L-DT Gene

Publications for APCDD1L-DT Gene

  1. Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines. (PMID: 24483146) Li L … Wang L (BMC genomics 2014) 3 58
  2. Longitudinal genome-wide association of cardiovascular disease risk factors in the Bogalusa heart study. (PMID: 20838585) Smith EN … Murray SS (PLoS genetics 2010) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for APCDD1L-DT Gene

Sources for APCDD1L-DT Gene

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