Aliases for APCDD1L-DT Gene

Subcategory (RNA class) for APCDD1L-DT Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for APCDD1L-DT Gene

  • APCDD1L Divergent Transcript 2 3 5
  • APCDD1L Antisense RNA 1 (Non-Protein Coding) 2 3
  • APCDD1L Antisense RNA 1 (Head To Head) 2 3
  • APCDD1L-DT 2 168
  • APCDD1L Antisense RNA 1 2
  • HSALNG0131254 167
  • NONHSAG032143 92
  • APCDD1L-AS1 3

External Ids for APCDD1L-DT Gene

Previous HGNC Symbols for APCDD1L-DT Gene

  • APCDD1L-AS1

Summaries for APCDD1L-DT Gene

GeneCards Summary for APCDD1L-DT Gene

APCDD1L-DT (APCDD1L Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with APCDD1L-DT include Astrocytoma and Lung Squamous Cell Carcinoma.

Additional gene information for APCDD1L-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for APCDD1L-DT Gene

Genomics for APCDD1L-DT Gene

GeneHancer (GH) Regulatory Elements for APCDD1L-DT Gene

Promoters and enhancers for APCDD1L-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J058514 Promoter/Enhancer 1.5 EPDnew Ensembl dbSUPER 506.4 +0.7 706 3.6 FOXK2 NONO FOS GABPA ZBTB26 KLF4 GATAD2B CTBP1 ZNF341 HES1 APCDD1L APCDD1L-DT lnc-APCDD1L-1 STX16 ZBP1
GH20J058622 Promoter/Enhancer 1.9 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.3 +110.5 110492 6 ZNF217 TCF12 JUND PHB2 FOS ZIC2 REST ZBTB10 FOXA1 AFF1 STX16 NELFCD ENSG00000225806 APCDD1L APCDD1L-DT piR-47958 ENSG00000254620
GH20J058549 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 12 +35.6 35581 1.4 FOS ZIC2 RFX1 CHD1 EP300 GATAD2B MYC CHD2 RCOR1 FOSL1 APCDD1L NELFCD STX16 APCDD1L-DT lnc-APCDD1L-1 ENSG00000254620
GH20J058568 Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.4 +55.7 55707 5 ZBTB17 CEBPG USF1 ZFHX2 EZH2 RCOR1 PRDM6 CEBPB BHLHE40 PRDM4 APCDD1L APCDD1L-DT ENSG00000254620 lnc-APCDD1L-1
GH20J058553 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.1 +39.6 39560 2.3 JUND FOS EP300 CREB1 CEBPB CHD2 JUN RCOR1 RFX5 SMC3 APCDD1L APCDD1L-DT ENSG00000254620 lnc-APCDD1L-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around APCDD1L-DT on UCSC Golden Path with GeneCards custom track

Genomic Locations for APCDD1L-DT Gene

Genomic Locations for APCDD1L-DT Gene
chr20:58,514,895-58,619,892
(GRCh38/hg38)
Size:
104,998 bases
Orientation:
Plus strand
chr20:57,090,435-57,194,948
(GRCh37/hg19)
Size:
104,514 bases
Orientation:
Plus strand

Genomic View for APCDD1L-DT Gene

Genes around APCDD1L-DT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
APCDD1L-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for APCDD1L-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for APCDD1L-DT Gene

Proteins for APCDD1L-DT Gene

Post-translational modifications for APCDD1L-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for APCDD1L-DT Gene

Domains & Families for APCDD1L-DT Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for APCDD1L-DT Gene

Function for APCDD1L-DT Gene

Phenotypes From GWAS Catalog for APCDD1L-DT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for APCDD1L-DT Gene

Localization for APCDD1L-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for APCDD1L-DT Gene

Pathways & Interactions for APCDD1L-DT Gene

PathCards logo

SuperPathways for APCDD1L-DT Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for APCDD1L-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for APCDD1L-DT Gene

Drugs & Compounds for APCDD1L-DT Gene

No Compound Related Data Available

Transcripts for APCDD1L-DT Gene

mRNA/cDNA for APCDD1L-DT Gene

23 RNACentral transcripts :
1 REFSEQ mRNAs :
4 NCBI additional mRNA sequence :
9 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
10 NONCODE transcripts :
10 LncBook transcripts :
23 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for APCDD1L-DT Gene

No ASD Table

Relevant External Links for APCDD1L-DT Gene

GeneLoc Exon Structure for
APCDD1L-DT

Expression for APCDD1L-DT Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for APCDD1L-DT

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for APCDD1L-DT Gene

Orthologs for APCDD1L-DT Gene

Evolution for APCDD1L-DT Gene

ENSEMBL:
Gene Tree for APCDD1L-DT (if available)
TreeFam:
Gene Tree for APCDD1L-DT (if available)

No data available for Orthologs for APCDD1L-DT Gene

Paralogs for APCDD1L-DT Gene

No data available for Paralogs for APCDD1L-DT Gene

Variants for APCDD1L-DT Gene

Additional dbSNP identifiers (rs#s) for APCDD1L-DT Gene

Structural Variations from Database of Genomic Variants (DGV) for APCDD1L-DT Gene

Variant ID Type Subtype PubMed ID
dgv2273n106 CNV deletion 24896259
esv1004047 CNV deletion 20482838
esv2117299 CNV deletion 18987734
esv2470822 CNV insertion 19546169
esv26473 CNV loss 19812545
esv2668602 CNV deletion 23128226
esv2722622 CNV deletion 23290073
esv3358083 CNV insertion 20981092
esv3376382 CNV insertion 20981092
esv3414478 CNV insertion 20981092
esv3646224 CNV loss 21293372
nsv1063462 CNV gain 25217958
nsv1072549 CNV deletion 25765185
nsv1117290 CNV tandem duplication 24896259
nsv179317 CNV deletion 16902084
nsv180089 CNV insertion 16902084
nsv3429 CNV insertion 18451855
nsv513551 CNV insertion 21212237
nsv586351 CNV loss 21841781
nsv834019 CNV loss 17160897

Additional Variant Information for APCDD1L-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
APCDD1L-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for APCDD1L-DT Gene

Disorders for APCDD1L-DT Gene

MalaCards: The human disease database

(2) MalaCards diseases for APCDD1L-DT Gene - From: LncRNADisease, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
astrocytoma
  • astrocytic tumor
lung squamous cell carcinoma
  • epidermoid cell carcinoma of the lung
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for APCDD1L-DT

genes like me logo Genes that share disorders with APCDD1L-DT: view

No data available for UniProtKB/Swiss-Prot and Genatlas for APCDD1L-DT Gene

Publications for APCDD1L-DT Gene

  1. Long non-coding RNAs RP5-821D11.7, APCDD1L-AS1 and RP11-277P12.9 were associated with the prognosis of lung squamous cell carcinoma. (PMID: 29568882) Luo Y … Wang Z (Molecular medicine reports 2018) 3 54
  2. Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines. (PMID: 24483146) Li L … Wang L (BMC genomics 2014) 3 54
  3. Longitudinal genome-wide association of cardiovascular disease risk factors in the Bogalusa heart study. (PMID: 20838585) Smith EN … Murray SS (PLoS genetics 2010) 3 54
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

Products for APCDD1L-DT Gene

Sources for APCDD1L-DT Gene