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Aliases for APCDD1L-AS1 Gene

Subcategory (RNA class) for APCDD1L-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for APCDD1L-AS1 Gene

  • APCDD1L Antisense RNA 1 (Head To Head) 2 3 5
  • APCDD1L Antisense RNA 1 (Non-Protein Coding) 2
  • APCDD1L Antisense RNA 1 2

External Ids for APCDD1L-AS1 Gene

Previous GeneCards Identifiers for APCDD1L-AS1 Gene

  • GC20P057092

Summaries for APCDD1L-AS1 Gene

GeneCards Summary for APCDD1L-AS1 Gene

APCDD1L-AS1 (APCDD1L Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for APCDD1L-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for APCDD1L-AS1 Gene

Genomics for APCDD1L-AS1 Gene

GeneHancer (GH) Regulatory Elements for APCDD1L-AS1 Gene

Promoters and enhancers for APCDD1L-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I058514 Promoter/Enhancer 1 EPDnew dbSUPER 550.8 -0.5 -472 0.1 ZNF341 CTBP2 KLF4 ZBTB26 EZH2 APCDD1L APCDD1L-AS1 GC20M058516 VAPB
GH20I058549 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 12 +35.1 35139 1.3 NFIB MAX ZIC2 RFX5 FOSL1 GATA3 HSF1 VEZF1 SMC3 RCOR1 APCDD1L APCDD1L-AS1 GC20M058516 ENSG00000254620
GH20I058541 Enhancer 1 Ensembl ENCODE dbSUPER 12 +26.7 26650 1.2 SMARCE1 PKNOX1 JUN CEBPB EP300 FOSL1 JUND EGR1 SMARCA4 VEZF1 APCDD1L APCDD1L-AS1 GC20M058516 ENSG00000254620
GH20I058372 Enhancer 1.2 Ensembl ENCODE 9.8 -140.9 -140893 4.2 HDGF ATF1 SIN3A ZNF48 ETS1 TCF12 ZNF207 ZNF143 RXRA MIER2 PPP4R1L RAB22A ANKRD60 APCDD1L APCDD1L-AS1 ENSG00000254419 VAPB PIR40663
GH20I058547 Enhancer 0.8 ENCODE dbSUPER 12 +32.7 32668 1.3 MAZ EP300 JUND MAFF ZNF341 ZNF24 RCOR1 CHD2 DEK APCDD1L APCDD1L-AS1 GC20M058516 ENSG00000254620
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around APCDD1L-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for APCDD1L-AS1 Gene

Genomic Locations for APCDD1L-AS1 Gene
chr20:58,515,379-58,619,892
(GRCh38/hg38)
Size:
104,514 bases
Orientation:
Plus strand
chr20:57,090,435-57,194,948
(GRCh37/hg19)

Genomic View for APCDD1L-AS1 Gene

Genes around APCDD1L-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
APCDD1L-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for APCDD1L-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for APCDD1L-AS1 Gene

Proteins for APCDD1L-AS1 Gene

Post-translational modifications for APCDD1L-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for APCDD1L-AS1 Gene

Domains & Families for APCDD1L-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for APCDD1L-AS1 Gene

Function for APCDD1L-AS1 Gene

Phenotypes From GWAS Catalog for APCDD1L-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for APCDD1L-AS1 Gene

Localization for APCDD1L-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for APCDD1L-AS1 Gene

Pathways & Interactions for APCDD1L-AS1 Gene

SuperPathways for APCDD1L-AS1 Gene

No Data Available

Interacting Proteins for APCDD1L-AS1 Gene

Gene Ontology (GO) - Biological Process for APCDD1L-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for APCDD1L-AS1 Gene

Drugs & Compounds for APCDD1L-AS1 Gene

No Compound Related Data Available

Transcripts for APCDD1L-AS1 Gene

mRNA/cDNA for APCDD1L-AS1 Gene

(4) Additional mRNA sequences :
(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for APCDD1L-AS1 Gene

APCDD1L antisense RNA 1 (head to head):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for APCDD1L-AS1 Gene

No ASD Table

Relevant External Links for APCDD1L-AS1 Gene

GeneLoc Exon Structure for
APCDD1L-AS1
ECgene alternative splicing isoforms for
APCDD1L-AS1

Expression for APCDD1L-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for APCDD1L-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for APCDD1L-AS1 Gene

This gene is overexpressed in Minor Salivary Gland (x10.0), Breast - Mammary Tissue (x5.4), and Kidney - Cortex (x4.8).

SOURCE GeneReport for Unigene cluster for APCDD1L-AS1 Gene:

Hs.685214
genes like me logo Genes that share expression patterns with APCDD1L-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for APCDD1L-AS1 Gene

Orthologs for APCDD1L-AS1 Gene

Evolution for APCDD1L-AS1 Gene

ENSEMBL:
Gene Tree for APCDD1L-AS1 (if available)
TreeFam:
Gene Tree for APCDD1L-AS1 (if available)

No data available for Orthologs for APCDD1L-AS1 Gene

Paralogs for APCDD1L-AS1 Gene

No data available for Paralogs for APCDD1L-AS1 Gene

Variants for APCDD1L-AS1 Gene

Sequence variations from dbSNP and Humsavar for APCDD1L-AS1 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000048865 -- 58,620,046(+) G/C downstream_transcript_variant
rs1000049400 -- 58,609,254(+) C/T intron_variant
rs1000055850 -- 58,574,287(+) C/T intron_variant
rs1000070711 -- 58,569,122(+) G/A intron_variant
rs1000071630 -- 58,587,513(+) G/C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for APCDD1L-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv2273n106 CNV deletion 24896259
esv1004047 CNV deletion 20482838
esv2117299 CNV deletion 18987734
esv2470822 CNV insertion 19546169
esv26473 CNV loss 19812545
esv2668602 CNV deletion 23128226
esv2722622 CNV deletion 23290073
esv3358083 CNV insertion 20981092
esv3376382 CNV insertion 20981092
esv3414478 CNV insertion 20981092
esv3646224 CNV loss 21293372
nsv1063462 CNV gain 25217958
nsv1072549 CNV deletion 25765185
nsv1117290 CNV tandem duplication 24896259
nsv179317 CNV deletion 16902084
nsv180089 CNV insertion 16902084
nsv3429 CNV insertion 18451855
nsv513551 CNV insertion 21212237
nsv586351 CNV loss 21841781
nsv834019 CNV loss 17160897

Additional Variant Information for APCDD1L-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
APCDD1L-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for APCDD1L-AS1 Gene

Disorders for APCDD1L-AS1 Gene

Additional Disease Information for APCDD1L-AS1

No disorders were found for APCDD1L-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for APCDD1L-AS1 Gene

Publications for APCDD1L-AS1 Gene

  1. Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines. (PMID: 24483146) Li L … Wang L (BMC genomics 2014) 3 58
  2. Longitudinal genome-wide association of cardiovascular disease risk factors in the Bogalusa heart study. (PMID: 20838585) Smith EN … Murray SS (PLoS genetics 2010) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for APCDD1L-AS1 Gene

Sources for APCDD1L-AS1 Gene

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