Aliases for AP4B1-AS1 Gene

Subcategory (RNA class) for AP4B1-AS1 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for AP4B1-AS1 Gene

  • AP4B1 Antisense RNA 1 2 3 5
  • AP4B1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • NONHSAG002475 94
  • HSALNG0006197 169
  • AP4B1-AS1 2

External Ids for AP4B1-AS1 Gene

Previous GeneCards Identifiers for AP4B1-AS1 Gene

  • GC01P114400

Summaries for AP4B1-AS1 Gene

GeneCards Summary for AP4B1-AS1 Gene

AP4B1-AS1 (AP4B1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with AP4B1-AS1 include Spastic Paraplegia 47.

Additional gene information for AP4B1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for AP4B1-AS1 Gene

Genomics for AP4B1-AS1 Gene

GeneHancer (GH) Regulatory Elements for AP4B1-AS1 Gene

Promoters and enhancers for AP4B1-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around AP4B1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for AP4B1-AS1 Gene

Genomic Locations for AP4B1-AS1 Gene
chr1:113,812,612-113,901,237
(GRCh38/hg38)
Size:
88,626 bases
Orientation:
Plus strand
chr1:114,399,257-114,443,859
(GRCh37/hg19)
Size:
44,603 bases
Orientation:
Plus strand

Genomic View for AP4B1-AS1 Gene

Genes around AP4B1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AP4B1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AP4B1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AP4B1-AS1 Gene

Proteins for AP4B1-AS1 Gene

Post-translational modifications for AP4B1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AP4B1-AS1 Gene

Domains & Families for AP4B1-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for AP4B1-AS1 Gene

Function for AP4B1-AS1 Gene

Phenotypes From GWAS Catalog for AP4B1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AP4B1-AS1 Gene

Localization for AP4B1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AP4B1-AS1 Gene

Pathways & Interactions for AP4B1-AS1 Gene

PathCards logo

SuperPathways for AP4B1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for AP4B1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AP4B1-AS1 Gene

Drugs & Compounds for AP4B1-AS1 Gene

No Compound Related Data Available

Transcripts for AP4B1-AS1 Gene

mRNA/cDNA for AP4B1-AS1 Gene

(2) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(5) RNACentral transcripts :
(4) LncBook transcripts :
(4) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for AP4B1-AS1 Gene

No ASD Table

Relevant External Links for AP4B1-AS1 Gene

GeneLoc Exon Structure for
AP4B1-AS1
ECgene alternative splicing isoforms for
AP4B1-AS1

Expression for AP4B1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for AP4B1-AS1 Gene

SOURCE GeneReport for Unigene cluster for AP4B1-AS1 Gene:

Hs.664669
genes like me logo Genes that share expression patterns with AP4B1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AP4B1-AS1 Gene

Orthologs for AP4B1-AS1 Gene

Evolution for AP4B1-AS1 Gene

ENSEMBL:
Gene Tree for AP4B1-AS1 (if available)
TreeFam:
Gene Tree for AP4B1-AS1 (if available)

No data available for Orthologs for AP4B1-AS1 Gene

Paralogs for AP4B1-AS1 Gene

No data available for Paralogs for AP4B1-AS1 Gene

Variants for AP4B1-AS1 Gene

Sequence variations from dbSNP and Humsavar for AP4B1-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1043676103 uncertain-significance, History of neurodevelopmental disorder 113,896,023(+) A/G intron_variant
rs1060499756 likely-pathogenic, Abnormality of brain morphology 113,897,860(+) C/A intron_variant
rs1060499771 likely-pathogenic, Abnormality of brain morphology 113,900,063(+) A/G non_coding_transcript_variant
rs111785152 likely-benign, uncertain-significance, Spastic paraplegia 47, autosomal recessive, History of neurodevelopmental disorder 113,900,120(+) C/A/T non_coding_transcript_variant
rs114201291 benign-likely-benign, benign, not specified, Spastic paraplegia 47, autosomal recessive, History of neurodevelopmental disorder 113,896,403(+) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for AP4B1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv23869 CNV loss 19812545
esv3587239 CNV loss 21293372
esv3587240 CNV loss 21293372
esv3587251 CNV loss 21293372
nsv473902 CNV novel sequence insertion 20440878
nsv951398 CNV duplication 24416366

Additional Variant Information for AP4B1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AP4B1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for AP4B1-AS1 Gene

Disorders for AP4B1-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for AP4B1-AS1 Gene - From: GeneCards

Disorder Aliases PubMed IDs
spastic paraplegia 47
  • spastic paraplegia, type 47
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for AP4B1-AS1

genes like me logo Genes that share disorders with AP4B1-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for AP4B1-AS1 Gene

Publications for AP4B1-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56

Products for AP4B1-AS1 Gene

Sources for AP4B1-AS1 Gene