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Aliases for AP4B1-AS1 Gene

Subcategory (RNA class) for AP4B1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for AP4B1-AS1 Gene

  • AP4B1 Antisense RNA 1 2 3 5
  • AP4B1 Antisense RNA 1 (Non-Protein Coding) 2 3

External Ids for AP4B1-AS1 Gene

Previous GeneCards Identifiers for AP4B1-AS1 Gene

  • GC01P114400

Summaries for AP4B1-AS1 Gene

GeneCards Summary for AP4B1-AS1 Gene

AP4B1-AS1 (AP4B1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for AP4B1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AP4B1-AS1 Gene

Genomics for AP4B1-AS1 Gene

GeneHancer (GH) Regulatory Elements for AP4B1-AS1 Gene

Promoters and enhancers for AP4B1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J113809 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 660.4 -1.1 -1060 4.7 DMAP1 YY1 SLC30A9 E2F8 ZNF143 SP3 NFYC ZNF610 NBN WT1 RSBN1 AP4B1-AS1 ENSG00000231128 LOC100421402 TRIM33 LRIG2 SIKE1 PHTF1 OLFML3 AP4B1
GH01J113927 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 13 +119.3 119296 8.4 MLX ZFP64 FEZF1 DMAP1 YY1 ZNF213 E2F8 ZNF143 SP3 NFYC HIPK1 TRIM33 LOC100421402 LRIG2 RSBN1 SIKE1 DCLRE1B OLFML3 AP4B1-AS1 AP4B1
GH01J114754 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 10 +944.2 944173 4.8 HDGF PKNOX1 FOXA2 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 TRIM33 CSDE1 SIKE1 RSBN1 AP4B1-AS1 TSPAN2 PIR52575 GC01M114751 GC01M114679
GH01J112953 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10 -856.6 -856604 4.8 MLX DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 SP3 NFYC MEF2D SLC16A1 SLC16A1-AS1 LOC100421402 RSBN1 LRIG2 ST7L CAPZA1 RPS15P1 LOC105378910 AP4B1-AS1
GH01J114715 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10 +903.8 903829 2.4 HDGF PKNOX1 CLOCK MLX ARNT ARID4B SIN3A YBX1 DMAP1 YY1 NRAS TRIM33 SIKE1 DENND2C CSDE1 AP4B1-AS1 TSPAN2 RN7SL432P GC01M114679
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around AP4B1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for AP4B1-AS1 Gene

Genomic Locations for AP4B1-AS1 Gene
88,626 bases
Plus strand
44,603 bases
Plus strand

Genomic View for AP4B1-AS1 Gene

Genes around AP4B1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AP4B1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AP4B1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AP4B1-AS1 Gene

Proteins for AP4B1-AS1 Gene

Post-translational modifications for AP4B1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AP4B1-AS1 Gene

Domains & Families for AP4B1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for AP4B1-AS1 Gene

Function for AP4B1-AS1 Gene

Phenotypes From GWAS Catalog for AP4B1-AS1 Gene

Animal Model Products

  • Taconic Biosciences Mouse Models for AP4B1-AS1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AP4B1-AS1 Gene

Localization for AP4B1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AP4B1-AS1 Gene

Pathways & Interactions for AP4B1-AS1 Gene

SuperPathways for AP4B1-AS1 Gene

No Data Available

Interacting Proteins for AP4B1-AS1 Gene

Gene Ontology (GO) - Biological Process for AP4B1-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for AP4B1-AS1 Gene

Drugs & Compounds for AP4B1-AS1 Gene

No Compound Related Data Available

Transcripts for AP4B1-AS1 Gene

mRNA/cDNA for AP4B1-AS1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Unigene Clusters for AP4B1-AS1 Gene

AP4B1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for AP4B1-AS1 Gene

No ASD Table

Relevant External Links for AP4B1-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for AP4B1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for AP4B1-AS1 Gene

SOURCE GeneReport for Unigene cluster for AP4B1-AS1 Gene:

genes like me logo Genes that share expression patterns with AP4B1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AP4B1-AS1 Gene

Orthologs for AP4B1-AS1 Gene

Evolution for AP4B1-AS1 Gene

Gene Tree for AP4B1-AS1 (if available)
Gene Tree for AP4B1-AS1 (if available)

No data available for Orthologs for AP4B1-AS1 Gene

Paralogs for AP4B1-AS1 Gene

No data available for Paralogs for AP4B1-AS1 Gene

Variants for AP4B1-AS1 Gene

Sequence variations from dbSNP and Humsavar for AP4B1-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1060499756 likely-pathogenic, Abnormality of brain morphology 113,897,860(+) C/A intron_variant
rs1060499771 likely-pathogenic, Abnormality of brain morphology 113,900,063(+) A/G non_coding_transcript_variant
rs114201291 conflicting-interpretations-of-pathogenicity, benign, not specified, Spastic paraplegia 47, autosomal recessive 113,896,403(+) A/G intron_variant
rs114734921 benign, likely-benign, Spastic paraplegia 47, autosomal recessive, not provided, not specified 113,895,826(+) T/C intron_variant
rs141417436 uncertain-significance, not specified, Spastic paraplegia 47, autosomal recessive 113,900,263(+) A/G non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for AP4B1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv23869 CNV loss 19812545
esv3587239 CNV loss 21293372
esv3587240 CNV loss 21293372
esv3587251 CNV loss 21293372
nsv473902 CNV novel sequence insertion 20440878
nsv951398 CNV duplication 24416366

Additional Variant Information for AP4B1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for AP4B1-AS1 Gene

Disorders for AP4B1-AS1 Gene

Additional Disease Information for AP4B1-AS1

No disorders were found for AP4B1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AP4B1-AS1 Gene

Publications for AP4B1-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for AP4B1-AS1 Gene

Sources for AP4B1-AS1 Gene

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