Aliases for AP4B1-AS1 Gene

Subcategory (RNA class) for AP4B1-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for AP4B1-AS1 Gene

  • AP4B1 Antisense RNA 1 2 3 5
  • AP4B1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • AP4B1-AS1 2 5
  • NONHSAG002475.2 91
  • Lnc-DCLRE1B-12 165
  • HSALNG0006197 164

External Ids for AP4B1-AS1 Gene

Previous GeneCards Identifiers for AP4B1-AS1 Gene

  • GC01P114400

Summaries for AP4B1-AS1 Gene

GeneCards Summary for AP4B1-AS1 Gene

AP4B1-AS1 (AP4B1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with AP4B1-AS1 include Spastic Paraplegia 47, Autosomal Recessive and Spastic Paraplegia 47.

Additional gene information for AP4B1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for AP4B1-AS1 Gene

Genomics for AP4B1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for AP4B1-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around AP4B1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for AP4B1-AS1 Gene

Genomic Locations for AP4B1-AS1 Gene
chr1:113,812,612-113,901,237
(GRCh38/hg38)
Size:
88,626 bases
Orientation:
Plus strand
chr1:114,399,257-114,443,859
(GRCh37/hg19)
Size:
44,603 bases
Orientation:
Plus strand

Genomic View for AP4B1-AS1 Gene

Genes around AP4B1-AS1 on UCSC Golden Path with GeneCards custom track
AP4B1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
AP4B1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AP4B1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AP4B1-AS1 Gene

Proteins for AP4B1-AS1 Gene

Post-translational modifications for AP4B1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AP4B1-AS1 Gene

Domains & Families for AP4B1-AS1 Gene

Gene Families for AP4B1-AS1 Gene

genes like me logo Genes that share domains with AP4B1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for AP4B1-AS1 Gene

Function for AP4B1-AS1 Gene

Phenotypes From GWAS Catalog for AP4B1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AP4B1-AS1 Gene

Localization for AP4B1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AP4B1-AS1 Gene

Pathways & Interactions for AP4B1-AS1 Gene

PathCards logo

SuperPathways for AP4B1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for AP4B1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for AP4B1-AS1 Gene

Drugs & Compounds for AP4B1-AS1 Gene

No Compound Related Data Available

Transcripts for AP4B1-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for AP4B1-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000036AE88_9606 lncRNA 1734 5

HGNC: 44114,

RefSeq: NR_037864,

Ensembl: ENST00000419536 (view in UCSC) ,

LncBook: HSALNT0012970,

NONCODE: NONHSAT005341.2,

URS00007E426A_9606 lncRNA 1902 3

RefSeq: NR_125965,

LncBook: HSALNT0012959,

NONCODE: NONHSAT149626.1,

URS0000166700_9606 lncRNA 422 3

LncBook: HSALNT0012957,

LNCipedia: lnc-DCLRE1B-12:1,

NONCODE: NONHSAT005337.2,

URS00009AE7DC_9606 lncRNA 1734 2

LncBook: HSALNT0012971,

NONCODE: NONHSAT149627.1,

URS0000D56CB4_9606 lncRNA 1273 2

LncBook: HSALNT0012963,

LNCipedia: lnc-DCLRE1B-12:4,

AP4B1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for AP4B1-AS1 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for AP4B1-AS1 Gene

No ASD Table

Relevant External Links for AP4B1-AS1 Gene

GeneLoc Exon Structure for
AP4B1-AS1

Expression for AP4B1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for AP4B1-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for AP4B1-AS1

SOURCE GeneReport for Unigene cluster for AP4B1-AS1 Gene:

Hs.664669
genes like me logo Genes that share expression patterns with AP4B1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AP4B1-AS1 Gene

Orthologs for AP4B1-AS1 Gene

Evolution for AP4B1-AS1 Gene

ENSEMBL:
Gene Tree for AP4B1-AS1 (if available)
TreeFam:
Gene Tree for AP4B1-AS1 (if available)

No data available for Orthologs for AP4B1-AS1 Gene

Paralogs for AP4B1-AS1 Gene

No data available for Paralogs for AP4B1-AS1 Gene

Variants for AP4B1-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for AP4B1-AS1 Gene

SNP ID Clinical significance and condition Chr 01 pos Variation AA Info Type
641009 Uncertain Significance: Spastic paraplegia 47, autosomal recessive 113,900,138(+) A/G MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT
647839 Uncertain Significance: Spastic paraplegia 47, autosomal recessive 113,896,308(+) C/T MISSENSE_VARIANT
649686 Uncertain Significance: Spastic paraplegia 47, autosomal recessive 113,898,768(+) A/G MISSENSE_VARIANT
654325 Uncertain Significance: Spastic paraplegia 47, autosomal recessive 113,895,417(+) T/C MISSENSE_VARIANT
656485 Uncertain Significance: Spastic paraplegia 47, autosomal recessive 113,895,810(+) C/A MISSENSE_VARIANT

Additional dbSNP identifiers (rs#s) for AP4B1-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for AP4B1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv23869 CNV loss 19812545
esv3587239 CNV loss 21293372
esv3587240 CNV loss 21293372
esv3587251 CNV loss 21293372
nsv473902 CNV novel sequence insertion 20440878
nsv951398 CNV duplication 24416366

Additional Variant Information for AP4B1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AP4B1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for AP4B1-AS1 Gene

Disorders for AP4B1-AS1 Gene

MalaCards: The human disease database

(3) MalaCards diseases for AP4B1-AS1 Gene - From: GeneCards

Disorder Aliases PubMed IDs
spastic paraplegia 47, autosomal recessive
  • spg47
spastic paraplegia 47
  • spastic paraplegia, type 47
hereditary spastic paraplegia
  • spastic paraplegia 3, autosomal dominant
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for AP4B1-AS1

genes like me logo Genes that share disorders with AP4B1-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for AP4B1-AS1 Gene

Publications for AP4B1-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for AP4B1-AS1 Gene

Sources for AP4B1-AS1 Gene