Free for academic non-profit institutions. Other users need a Commercial license

Aliases for AOC4P Gene

Aliases for AOC4P Gene

  • Amine Oxidase, Copper Containing 4, Pseudogene 2 3 5
  • Ubiquitin-Like Plant Homeodomain (PHD) And Really Interesting New Gene (RING) Finger Domain-Containing Protein 1 (UHRF1) Protein Associated Transcript 2 3
  • Amine Oxidase, Copper Containing 3 (Vascular Adhesion Protein 1) Pseudogene 3
  • Amine Oxidase Pseudogene 3
  • AOC4 3
  • UPAT 3

External Ids for AOC4P Gene

Previous GeneCards Identifiers for AOC4P Gene

  • GC17P041017

Summaries for AOC4P Gene

GeneCards Summary for AOC4P Gene

AOC4P (Amine Oxidase, Copper Containing 4, Pseudogene) is a Pseudogene.

Additional gene information for AOC4P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AOC4P Gene

Genomics for AOC4P Gene

GeneHancer (GH) Regulatory Elements for AOC4P Gene

Promoters and enhancers for AOC4P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I042867 Enhancer 0.9 ENCODE 550.8 +1.0 983 0.7 ELF3 FOXA2 MLX ZFP64 ARID4B THRB RAD21 RARA YY1 CREM AOC4P LINC00671 RNU6-287P
GH17I042865 Enhancer 0.8 ENCODE 550.8 -0.2 -163 0.2 ELF3 FOXA2 MLX ARID4B DMAP1 THRB RAD21 RARA CREM THAP11 AOC4P AOC3
GH17I042866 Enhancer 0.8 ENCODE 550.8 0.0 -36 0.1 ELF3 FOXA2 MLX ARID4B DMAP1 THRB RAD21 RARA CREM THAP11 AOC4P AOC3
GH17I042864 Enhancer 0.7 Ensembl ENCODE 550.8 -1.2 -1178 1.2 RXRA ZBTB48 IKZF1 ATF7 HNF4A ATF2 AOC4P AOC3
GH17I042850 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE dbSUPER 11.7 -13.2 -13163 4.2 ELF3 ARID4B DMAP1 THRB RARA SCRT2 SP5 ZHX2 MIER2 ELF1 AOC3 AOC4P MEOX1 AOC2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around AOC4P on UCSC Golden Path with GeneCards custom track

Genomic Locations for AOC4P Gene

Genomic Locations for AOC4P Gene
chr17:42,865,922-42,874,369
(GRCh38/hg38)
Size:
8,448 bases
Orientation:
Plus strand
chr17:41,017,939-41,026,386
(GRCh37/hg19)

Genomic View for AOC4P Gene

Genes around AOC4P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AOC4P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AOC4P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AOC4P Gene

Proteins for AOC4P Gene

Post-translational modifications for AOC4P Gene

No Post-translational modifications

No data available for DME Specific Peptides for AOC4P Gene

Domains & Families for AOC4P Gene

Gene Families for AOC4P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with AOC4P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for AOC4P Gene

Function for AOC4P Gene

Phenotypes From GWAS Catalog for AOC4P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AOC4P Gene

Localization for AOC4P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AOC4P Gene

Pathways & Interactions for AOC4P Gene

SuperPathways for AOC4P Gene

No Data Available

Interacting Proteins for AOC4P Gene

Gene Ontology (GO) - Biological Process for AOC4P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AOC4P Gene

Drugs & Compounds for AOC4P Gene

No Compound Related Data Available

Transcripts for AOC4P Gene

Alternative Splicing Database (ASD) splice patterns (SP) for AOC4P Gene

No ASD Table

Relevant External Links for AOC4P Gene

GeneLoc Exon Structure for
AOC4P
ECgene alternative splicing isoforms for
AOC4P

Expression for AOC4P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for AOC4P Gene

mRNA differential expression in normal tissues according to GTEx for AOC4P Gene

This gene is overexpressed in Liver (x8.1), Artery - Tibial (x7.6), and Adipose - Subcutaneous (x5.1).

NURSA nuclear receptor signaling pathways regulating expression of AOC4P Gene:

AOC4P
genes like me logo Genes that share expression patterns with AOC4P: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AOC4P Gene

Orthologs for AOC4P Gene

Evolution for AOC4P Gene

ENSEMBL:
Gene Tree for AOC4P (if available)
TreeFam:
Gene Tree for AOC4P (if available)

No data available for Orthologs for AOC4P Gene

Paralogs for AOC4P Gene

No data available for Paralogs for AOC4P Gene

Variants for AOC4P Gene

Sequence variations from dbSNP and Humsavar for AOC4P Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000892915 -- 42,867,615(+) G/A non_coding_transcript_variant
rs1003821926 -- 42,865,387(+) A/G upstream_transcript_variant
rs1006167411 -- 42,866,257(+) C/G upstream_transcript_variant
rs1006775235 -- 42,868,754(+) C/T non_coding_transcript_variant
rs1007154981 -- 42,869,097(+) A/G non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for AOC4P Gene

Variant ID Type Subtype PubMed ID
esv33998 OTHER inversion 15654335
nsv1146669 OTHER inversion 26484159
nsv483009 CNV gain 15286789

Additional Variant Information for AOC4P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AOC4P

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for AOC4P Gene

Disorders for AOC4P Gene

Additional Disease Information for AOC4P

No disorders were found for AOC4P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AOC4P Gene

Publications for AOC4P Gene

  1. Long non-coding RNA AOC4P suppresses hepatocellular carcinoma metastasis by enhancing vimentin degradation and inhibiting epithelial-mesenchymal transition. (PMID: 26160837) Wang TH … Chen TC (Oncotarget 2015) 2 3 58
  2. Structural organization of mammalian copper-containing amine oxidase genes. (PMID: 20013028) Schwelberger HG (Inflammation research : official journal of the European Histamine Research Society ... [et al.] 2010) 2 3 58
  3. Long noncoding RNA UPAT promotes colon tumorigenesis by inhibiting degradation of UHRF1. (PMID: 26768845) Taniue K … Akiyama T (Proceedings of the National Academy of Sciences of the United States of America 2016) 3 58
  4. The origin of mammalian plasma amine oxidases. (PMID: 17385066) Schwelberger HG (Journal of neural transmission (Vienna, Austria : 1996) 2007) 3 58
  5. Characterization of AOC2 gene encoding a copper-binding amine oxidase expressed specifically in retina. (PMID: 14585497) Zhang Q … Iwata T (Gene 2003) 3 58

Products for AOC4P Gene

Sources for AOC4P Gene

Content
Loading form....