Aliases for AOAH-IT1 Gene

Subcategory (RNA class) for AOAH-IT1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for AOAH-IT1 Gene

  • AOAH Intronic Transcript 1 2 3 5
  • AOAH-IT1 2 5 165
  • AOAH Intronic Transcript 1 (Non-Protein Coding) 2 3
  • NONHSAG047354.2 91
  • HSALNG0057277 164

External Ids for AOAH-IT1 Gene

Previous GeneCards Identifiers for AOAH-IT1 Gene

  • GC00U933779
  • GC07M036638

Summaries for AOAH-IT1 Gene

GeneCards Summary for AOAH-IT1 Gene

AOAH-IT1 (AOAH Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for AOAH-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for AOAH-IT1 Gene

Genomics for AOAH-IT1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for AOAH-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J036591 Enhancer 0.5 FANTOM5 Ensembl dbSUPER 5.8 +8.0 8019 2.2 RF00001-300 ELMO1 AOAH AOAH-IT1 EEPD1 piR-46002-526 KIAA0895
GH07J036601 Enhancer 1.1 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -4.1 -4081 10 ZNF629 ZNF692 REST SP1 FOS ATF2 FOSL2 JUNB SPI1 JUND AOAH ELMO1 EEPD1 AOAH-IT1 piR-31199-331 KIAA0895
GH07J036596 Enhancer 0.8 Ensembl dbSUPER 0.7 +2.4 2420 1.8 REST ZNF512 NFE2 ZNF316 MAFG NCOR1 FOSL2 FOXA1 TAL1 KDM1A AOAH-IT1 RF00001-300 AOAH KIAA0895
GH07J036613 Enhancer 0.7 Ensembl dbSUPER 0.4 -13.0 -12981 3 IKZF2 DPF2 RELB RUNX3 IKZF1 SPI1 ZFP69B AOAH-IT1 piR-31199-331 AOAH KIAA0895
GH07J036637 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.3 -40.0 -39981 6.6 SCRT2 NFIC NFIB ZBTB40 GLIS1 TRIM28 CTBP1 GATA2 CTCF PKNOX1 piR-31199-331 lnc-ELMO1-1 AOAH-IT1 AOAH KIAA0895
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around AOAH-IT1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for AOAH-IT1 Gene

Genomic Locations for AOAH-IT1 Gene
chr7:36,597,834-36,600,120
(GRCh38/hg38)
Size:
2,287 bases
Orientation:
Minus strand
chr7:36,637,440-36,639,726
(GRCh37/hg19)
Size:
2,287 bases
Orientation:
Minus strand

Genomic View for AOAH-IT1 Gene

Genes around AOAH-IT1 on UCSC Golden Path with GeneCards custom track
AOAH-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
AOAH-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AOAH-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AOAH-IT1 Gene

Proteins for AOAH-IT1 Gene

Post-translational modifications for AOAH-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AOAH-IT1 Gene

Domains & Families for AOAH-IT1 Gene

Gene Families for AOAH-IT1 Gene

genes like me logo Genes that share domains with AOAH-IT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for AOAH-IT1 Gene

Function for AOAH-IT1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AOAH-IT1 Gene

Localization for AOAH-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AOAH-IT1 Gene

Pathways & Interactions for AOAH-IT1 Gene

PathCards logo

SuperPathways for AOAH-IT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for AOAH-IT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for AOAH-IT1 Gene

Drugs & Compounds for AOAH-IT1 Gene

No Compound Related Data Available

Transcripts for AOAH-IT1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for AOAH-IT1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000011308_9606 lncRNA 573 6

HGNC: 41307,

RefSeq: NR_046764,

Ensembl: ENST00000449672 (view in UCSC) ,

LncBook: HSALNT0121261,

LNCipedia: AOAH-IT1:1,

NONCODE: NONHSAT120132.2,

AOAH-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for AOAH-IT1 Gene

No ASD Table

Relevant External Links for AOAH-IT1 Gene

GeneLoc Exon Structure for
AOAH-IT1

No data available for mRNA/cDNA for AOAH-IT1 Gene

Expression for AOAH-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for AOAH-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for AOAH-IT1 Gene

This gene is overexpressed in Whole Blood (x45.1).

SOURCE GeneReport for Unigene cluster for AOAH-IT1 Gene:

Hs.690994
genes like me logo Genes that share expression patterns with AOAH-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AOAH-IT1 Gene

Orthologs for AOAH-IT1 Gene

Evolution for AOAH-IT1 Gene

ENSEMBL:
Gene Tree for AOAH-IT1 (if available)
TreeFam:
Gene Tree for AOAH-IT1 (if available)

No data available for Orthologs for AOAH-IT1 Gene

Paralogs for AOAH-IT1 Gene

No data available for Paralogs for AOAH-IT1 Gene

Variants for AOAH-IT1 Gene

Additional dbSNP identifiers (rs#s) for AOAH-IT1 Gene

Structural Variations from Database of Genomic Variants (DGV) for AOAH-IT1 Gene

Variant ID Type Subtype PubMed ID
nsv1032157 CNV gain 25217958
nsv464427 CNV loss 19166990
nsv606618 CNV loss 21841781
nsv830957 CNV gain 17160897
nsv830958 CNV gain 17160897

Additional Variant Information for AOAH-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AOAH-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for AOAH-IT1 Gene

Disorders for AOAH-IT1 Gene

No disorders were found for AOAH-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AOAH-IT1 Gene

Publications for AOAH-IT1 Gene

No publications were found for AOAH-IT1 Gene.

Products for AOAH-IT1 Gene

Sources for AOAH-IT1 Gene