Aliases for ANP32A-IT1 Gene

Subcategory (RNA class) for ANP32A-IT1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ANP32A-IT1 Gene

  • ANP32A Intronic Transcript 1 2 3
  • ANP32A Intronic Transcript 1 (Non-Protein Coding) 2 3
  • ANP32A-IT1 2 165
  • HsT18971 2 3
  • Chromosome 15 Open Reading Frame 28 2
  • Non-Protein Coding RNA 321 2
  • NONHSAG017268.2 91
  • HSALNG0106820 164
  • NCRNA00321 3
  • C15orf28 3
  • FLJ11722 2

External Ids for ANP32A-IT1 Gene

Previous HGNC Symbols for ANP32A-IT1 Gene

  • C15orf28
  • NCRNA00321

Previous GeneCards Identifiers for ANP32A-IT1 Gene

  • GC15M069097

Summaries for ANP32A-IT1 Gene

GeneCards Summary for ANP32A-IT1 Gene

ANP32A-IT1 (ANP32A Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with ANP32A-IT1 include Astrocytoma.

Additional gene information for ANP32A-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ANP32A-IT1 Gene

Genomics for ANP32A-IT1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ANP32A-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J068806 Enhancer 0.3 ENCODE 600.7 +0.4 424 0.2 FEZF1 ANP32A-IT1 MIR4312 ANP32A SPESP1 lnc-ITGA11-6 CORO2B
GH15J068812 Enhancer 0.6 dbSUPER 0.4 -5.8 -5848 2.1 TARDBP FOXA1 PRDM1 OSR2 GATA3 DPF2 PRDM6 RAD51 POLR2A MNT lnc-ITGA11-6 ANP32A ANP32A-IT1 SPESP1 CORO2B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ANP32A-IT1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ANP32A-IT1 Gene

Genomic Locations for ANP32A-IT1 Gene
chr15:68,803,820-68,807,101
(GRCh38/hg38)
Size:
3,282 bases
Orientation:
Minus strand
chr15:69,096,160-69,099,440
(GRCh37/hg19)
Size:
3,281 bases
Orientation:
Minus strand

Genomic View for ANP32A-IT1 Gene

Genes around ANP32A-IT1 on UCSC Golden Path with GeneCards custom track
ANP32A-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ANP32A-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ANP32A-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ANP32A-IT1 Gene

Proteins for ANP32A-IT1 Gene

Post-translational modifications for ANP32A-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ANP32A-IT1 Gene

Domains & Families for ANP32A-IT1 Gene

Gene Families for ANP32A-IT1 Gene

genes like me logo Genes that share domains with ANP32A-IT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ANP32A-IT1 Gene

Function for ANP32A-IT1 Gene

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ANP32A-IT1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ANP32A-IT1 Gene

Localization for ANP32A-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ANP32A-IT1 Gene

Pathways & Interactions for ANP32A-IT1 Gene

PathCards logo

SuperPathways for ANP32A-IT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ANP32A-IT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ANP32A-IT1 Gene

Drugs & Compounds for ANP32A-IT1 Gene

No Compound Related Data Available

Transcripts for ANP32A-IT1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ANP32A-IT1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075B48D_9606 lncRNA 3281 4

HGNC: 25672,

RefSeq: NR_026808,

LNCipedia: ANP32A-IT1:1,

NONCODE: NONHSAT046901.2,

URS0000EA43EE_9606 lncRNA 3282 1

LncBook: HSALNT0288887,

ANP32A-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ANP32A-IT1 Gene

2 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ANP32A-IT1

Alternative Splicing Database (ASD) splice patterns (SP) for ANP32A-IT1 Gene

No ASD Table

Relevant External Links for ANP32A-IT1 Gene

GeneLoc Exon Structure for
ANP32A-IT1

Expression for ANP32A-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ANP32A-IT1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ANP32A-IT1

SOURCE GeneReport for Unigene cluster for ANP32A-IT1 Gene:

Hs.662150
genes like me logo Genes that share expression patterns with ANP32A-IT1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ANP32A-IT1 Gene

Orthologs for ANP32A-IT1 Gene

No data available for Orthologs and Evolution for ANP32A-IT1 Gene

Paralogs for ANP32A-IT1 Gene

No data available for Paralogs for ANP32A-IT1 Gene

Variants for ANP32A-IT1 Gene

Additional dbSNP identifiers (rs#s) for ANP32A-IT1 Gene

Structural Variations from Database of Genomic Variants (DGV) for ANP32A-IT1 Gene

Variant ID Type Subtype PubMed ID
esv3636811 CNV loss 21293372
nsv833046 CNV loss 17160897

Additional Variant Information for ANP32A-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ANP32A-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for ANP32A-IT1 Gene

Disorders for ANP32A-IT1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for ANP32A-IT1 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
astrocytoma
  • astrocytic tumor
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for ANP32A-IT1

genes like me logo Genes that share disorders with ANP32A-IT1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ANP32A-IT1 Gene

Publications for ANP32A-IT1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 2 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for ANP32A-IT1 Gene

Sources for ANP32A-IT1 Gene