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Aliases for ANKRD44-IT1 Gene

Subcategory (RNA class) for ANKRD44-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for ANKRD44-IT1 Gene

  • ANKRD44 Intronic Transcript 1 2 3 5
  • ANKRD44 Intronic Transcript 1 (Non-Protein Coding) 2 3

External Ids for ANKRD44-IT1 Gene

Previous GeneCards Identifiers for ANKRD44-IT1 Gene

  • GC00U933638
  • GC02M198116

Summaries for ANKRD44-IT1 Gene

GeneCards Summary for ANKRD44-IT1 Gene

ANKRD44-IT1 (ANKRD44 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ANKRD44-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ANKRD44-IT1 Gene

Genomics for ANKRD44-IT1 Gene

GeneHancer (GH) Regulatory Elements for ANKRD44-IT1 Gene

Promoters and enhancers for ANKRD44-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J197203 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 12.4 +91.2 91234 15.7 HDGF PKNOX1 FOXA2 SMAD1 IRF4 YY1 TCF12 ATF7 RUNX3 RXRA ANKRD44 ANKRD44-IT1 LOC105373824 MOB4 COQ10B SF3B1 MARS2 HSPD1 LOC105373826 LOC101927596
GH02J197252 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 12.6 +46.1 46113 7.4 HDGF PKNOX1 SMAD1 RB1 BATF KLF5 IRF4 ZNF207 ZNF143 ATF7 ANKRD44 ANKRD44-IT1 LOC105373824 LOC101927596 COQ10B SF3B1 ATP5MC2P3 GC02P197242
GH02J197157 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 12.3 +142.9 142935 3.5 HDGF ELF3 FOXA2 ZSCAN4 STAT5A RARA YY1 FOS IKZF2 RUNX3 ANKRD44 ANKRD44-IT1 LOC105373824 COQ10B SF3B1 GC02P197128 LOC101927596
GH02J197235 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 12.4 +63.7 63687 6.1 PKNOX1 ZBED1 CEBPB JUNB MAFG CEBPG REST BATF ATF2 ZNF239 ANKRD44 ANKRD44-IT1 LOC105373824 LOC101927596 GC02P197242 GC02M197228
GH02J197194 Enhancer 1.2 Ensembl ENCODE dbSUPER 12.5 +104.2 104239 8.4 HDGF STAT5A BATF IRF4 ZBTB40 ELK1 ATF7 RCOR1 ETV6 BCLAF1 LOC101927596 ANKRD44-IT1 ANKRD44 LOC105373824 SF3B1 RNU6-1029P ENSG00000202434 MOB4 CCDC150 LOC105373826
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ANKRD44-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ANKRD44-IT1 Gene

Genomic Locations for ANKRD44-IT1 Gene
51,662 bases
Minus strand
51,662 bases
Minus strand

Genomic View for ANKRD44-IT1 Gene

Genes around ANKRD44-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ANKRD44-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ANKRD44-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ANKRD44-IT1 Gene

Proteins for ANKRD44-IT1 Gene

Post-translational modifications for ANKRD44-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ANKRD44-IT1 Gene

Domains & Families for ANKRD44-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ANKRD44-IT1 Gene

Function for ANKRD44-IT1 Gene

Phenotypes From GWAS Catalog for ANKRD44-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ANKRD44-IT1 Gene

Localization for ANKRD44-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ANKRD44-IT1 Gene

Pathways & Interactions for ANKRD44-IT1 Gene

SuperPathways for ANKRD44-IT1 Gene

No Data Available

Interacting Proteins for ANKRD44-IT1 Gene

Gene Ontology (GO) - Biological Process for ANKRD44-IT1 Gene


No data available for Pathways by source and SIGNOR curated interactions for ANKRD44-IT1 Gene

Drugs & Compounds for ANKRD44-IT1 Gene

No Compound Related Data Available

Transcripts for ANKRD44-IT1 Gene

mRNA/cDNA for ANKRD44-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ANKRD44-IT1 Gene

No ASD Table

Relevant External Links for ANKRD44-IT1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for ANKRD44-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ANKRD44-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for ANKRD44-IT1 Gene

This gene is overexpressed in Whole Blood (x7.6) and Testis (x6.7).
genes like me logo Genes that share expression patterns with ANKRD44-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ANKRD44-IT1 Gene

Orthologs for ANKRD44-IT1 Gene

Evolution for ANKRD44-IT1 Gene

Gene Tree for ANKRD44-IT1 (if available)
Gene Tree for ANKRD44-IT1 (if available)

No data available for Orthologs for ANKRD44-IT1 Gene

Paralogs for ANKRD44-IT1 Gene

No data available for Paralogs for ANKRD44-IT1 Gene

Variants for ANKRD44-IT1 Gene

Sequence variations from dbSNP and Humsavar for ANKRD44-IT1 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000003559 -- 197,291,399(-) A/G/T intron_variant
rs1000286954 -- 197,261,537(-) A/C intron_variant
rs1000304431 -- 197,274,576(-) C/A intron_variant
rs1000459831 -- 197,291,073(-) C/G intron_variant
rs1000515929 -- 197,303,610(-) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ANKRD44-IT1 Gene

Variant ID Type Subtype PubMed ID
nsv584155 CNV gain 21841781
nsv460015 CNV gain 19166990
nsv1126573 CNV deletion 24896259
nsv1002666 CNV gain 25217958
esv3593905 CNV loss 21293372
esv3593904 CNV loss 21293372
esv2674646 CNV deletion 23128226
esv22536 CNV loss 19812545
dgv4149n100 CNV gain 25217958

Additional Variant Information for ANKRD44-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ANKRD44-IT1 Gene

Disorders for ANKRD44-IT1 Gene

Additional Disease Information for ANKRD44-IT1

No disorders were found for ANKRD44-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ANKRD44-IT1 Gene

Publications for ANKRD44-IT1 Gene

  1. Genetic analysis of the pathogenic molecular sub-phenotype interferon-alpha identifies multiple novel loci involved in systemic lupus erythematosus. (PMID: 25338677) Kariuki SN … Niewold TB (Genes and immunity 2015) 3 58
  2. Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families. (PMID: 24962325) Kapoor M … Goate A (Drug and alcohol dependence 2014) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  4. Toward a complete human genome sequence. (PMID: 9847074) Sanger Center … Genome Sequencing Center (Genome research 1998) 3 58

Products for ANKRD44-IT1 Gene

Sources for ANKRD44-IT1 Gene

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