Aliases for ANKRD44-IT1 Gene

Subcategory (RNA class) for ANKRD44-IT1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ANKRD44-IT1 Gene

  • ANKRD44 Intronic Transcript 1 2 3 5
  • ANKRD44-IT1 2 5 165
  • ANKRD44 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • NONHSAG030169.2 91
  • HSALNG0021362 164

External Ids for ANKRD44-IT1 Gene

Previous GeneCards Identifiers for ANKRD44-IT1 Gene

  • GC00U933638
  • GC02M198116

Summaries for ANKRD44-IT1 Gene

GeneCards Summary for ANKRD44-IT1 Gene

ANKRD44-IT1 (ANKRD44 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ANKRD44-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ANKRD44-IT1 Gene

Genomics for ANKRD44-IT1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ANKRD44-IT1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ANKRD44-IT1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ANKRD44-IT1 Gene

Genomic Locations for ANKRD44-IT1 Gene
chr2:197,250,858-197,302,519
(GRCh38/hg38)
Size:
51,662 bases
Orientation:
Minus strand
chr2:198,115,582-198,167,243
(GRCh37/hg19)
Size:
51,662 bases
Orientation:
Minus strand

Genomic View for ANKRD44-IT1 Gene

Genes around ANKRD44-IT1 on UCSC Golden Path with GeneCards custom track
ANKRD44-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ANKRD44-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ANKRD44-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ANKRD44-IT1 Gene

Proteins for ANKRD44-IT1 Gene

Post-translational modifications for ANKRD44-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ANKRD44-IT1 Gene

Domains & Families for ANKRD44-IT1 Gene

Gene Families for ANKRD44-IT1 Gene

genes like me logo Genes that share domains with ANKRD44-IT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ANKRD44-IT1 Gene

Function for ANKRD44-IT1 Gene

Phenotypes From GWAS Catalog for ANKRD44-IT1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ANKRD44-IT1 Gene

Localization for ANKRD44-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ANKRD44-IT1 Gene

Pathways & Interactions for ANKRD44-IT1 Gene

PathCards logo

SuperPathways for ANKRD44-IT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ANKRD44-IT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ANKRD44-IT1 Gene

Drugs & Compounds for ANKRD44-IT1 Gene

No Compound Related Data Available

Transcripts for ANKRD44-IT1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ANKRD44-IT1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003BCF80_9606 lncRNA 1069 6

HGNC: 41477,

RefSeq: NR_046837,

Ensembl: ENST00000428191 (view in UCSC) ,

LncBook: HSALNT0045506,

LNCipedia: ANKRD44-IT1:1,

NONCODE: NONHSAT076212.2,

ANKRD44-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ANKRD44-IT1 Gene

1 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for ANKRD44-IT1 Gene

No ASD Table

Relevant External Links for ANKRD44-IT1 Gene

GeneLoc Exon Structure for
ANKRD44-IT1

Expression for ANKRD44-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ANKRD44-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for ANKRD44-IT1 Gene

This gene is overexpressed in Whole Blood (x7.6) and Testis (x6.7).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ANKRD44-IT1

genes like me logo Genes that share expression patterns with ANKRD44-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ANKRD44-IT1 Gene

Orthologs for ANKRD44-IT1 Gene

Evolution for ANKRD44-IT1 Gene

ENSEMBL:
Gene Tree for ANKRD44-IT1 (if available)
TreeFam:
Gene Tree for ANKRD44-IT1 (if available)

No data available for Orthologs for ANKRD44-IT1 Gene

Paralogs for ANKRD44-IT1 Gene

No data available for Paralogs for ANKRD44-IT1 Gene

Variants for ANKRD44-IT1 Gene

Additional dbSNP identifiers (rs#s) for ANKRD44-IT1 Gene

Structural Variations from Database of Genomic Variants (DGV) for ANKRD44-IT1 Gene

Variant ID Type Subtype PubMed ID
dgv4149n100 CNV gain 25217958
esv22536 CNV loss 19812545
esv2674646 CNV deletion 23128226
esv3593904 CNV loss 21293372
esv3593905 CNV loss 21293372
nsv1002666 CNV gain 25217958
nsv1126573 CNV deletion 24896259
nsv460015 CNV gain 19166990
nsv584155 CNV gain 21841781

Additional Variant Information for ANKRD44-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ANKRD44-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for ANKRD44-IT1 Gene

Disorders for ANKRD44-IT1 Gene

No disorders were found for ANKRD44-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ANKRD44-IT1 Gene

Publications for ANKRD44-IT1 Gene

  1. Genetic analysis of the pathogenic molecular sub-phenotype interferon-alpha identifies multiple novel loci involved in systemic lupus erythematosus. (PMID: 25338677) Kariuki SN … Niewold TB (Genes and immunity 2015) 3
  2. Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families. (PMID: 24962325) Kapoor M … Goate A (Drug and alcohol dependence 2014) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
  4. Toward a complete human genome sequence. (PMID: 9847074) Sanger Center … Genome Sequencing Center (Genome research 1998) 3

Products for ANKRD44-IT1 Gene

Sources for ANKRD44-IT1 Gene