Aliases for ANKRD40CL Gene

Aliases for ANKRD40CL Gene

  • ANKRD40 C-Terminal Like 2 3 5
  • Long Intergenic Non-Protein Coding RNA 483 2 3
  • Putative ANKRD40 C-Terminal-Like Protein 3 4
  • LINC00483 3 4
  • C17orf73 3 4
  • Chromosome 17 Open Reading Frame 73 2

External Ids for ANKRD40CL Gene

Previous HGNC Symbols for ANKRD40CL Gene

  • C17orf73
  • LINC00483

Summaries for ANKRD40CL Gene

GeneCards Summary for ANKRD40CL Gene

ANKRD40CL (ANKRD40 C-Terminal Like) is a Protein Coding gene. An important paralog of this gene is ANKRD40.

Additional gene information for ANKRD40CL Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ANKRD40CL Gene

Genomics for ANKRD40CL Gene

GeneHancer (GH) Regulatory Elements for ANKRD40CL Gene

Promoters and enhancers for ANKRD40CL Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J050762 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 +1.6 1551 6.4 ZNF217 ZSCAN5C POLR2G USF1 CLOCK KLF4 HES1 POLR2A HINFP ATF2 ANKRD40CL lnc-LINC00483-1 WFIKKN2 ENSG00000253730 ABCC3 MIR8059 lnc-LUC7L3-6
GH17J050756 Enhancer 0.9 Ensembl ENCODE 0.4 +10.3 10321 1.3 POLR2G FOXA2 ZNF263 POLR2A TBP RAD21 SAP130 POLR2H RBM22 CTCF lnc-LUC7L3-6 ANKRD40CL lnc-LINC00483-1
GH17J050753 Enhancer 0.4 dbSUPER 0.4 +13.6 13589 1.2 POLR2G RBM22 EGR1 ZBTB40 POLR2A lnc-LUC7L3-6 ABCC3 ANKRD40CL lnc-LINC00483-1 LUC7L3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ANKRD40CL on UCSC Golden Path with GeneCards custom track

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for ANKRD40CL

Genomic Locations for ANKRD40CL Gene

Genomic Locations for ANKRD40CL Gene
chr17:50,761,029-50,767,557
(GRCh38/hg38)
Size:
6,529 bases
Orientation:
Minus strand
chr17:48,834,759-48,844,918
(GRCh37/hg19)
Size:
10,160 bases
Orientation:
Minus strand

Genomic View for ANKRD40CL Gene

Genes around ANKRD40CL on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ANKRD40CL Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ANKRD40CL Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ANKRD40CL Gene

Proteins for ANKRD40CL Gene

  • Protein details for ANKRD40CL Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q53H64-AK40L_HUMAN
    Recommended name:
    Putative ANKRD40 C-terminal-like protein
    Protein Accession:
    Q53H64
    Secondary Accessions:
    • Q9NWQ1

    Protein attributes for ANKRD40CL Gene

    Size:
    114 amino acids
    Molecular mass:
    13397 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAA91328.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=BAD96437.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=EAW94582.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

neXtProt entry for ANKRD40CL Gene

Post-translational modifications for ANKRD40CL Gene

No Post-translational modifications

Other Protein References for ANKRD40CL Gene

No data available for DME Specific Peptides for ANKRD40CL Gene

Domains & Families for ANKRD40CL Gene

Gene Families for ANKRD40CL Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for ANKRD40CL Gene

InterPro:
ProtoNet:
genes like me logo Genes that share domains with ANKRD40CL: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ANKRD40CL Gene

Function for ANKRD40CL Gene

genes like me logo Genes that share phenotypes with ANKRD40CL: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ANKRD40CL Gene

Localization for ANKRD40CL Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ANKRD40CL Gene

Pathways & Interactions for ANKRD40CL Gene

PathCards logo

SuperPathways for ANKRD40CL Gene

No Data Available

Interacting Proteins for ANKRD40CL Gene

;

Gene Ontology (GO) - Biological Process for ANKRD40CL Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ANKRD40CL Gene

Drugs & Compounds for ANKRD40CL Gene

No Compound Related Data Available

Transcripts for ANKRD40CL Gene

mRNA/cDNA for ANKRD40CL Gene

2 REFSEQ mRNAs :
7 NCBI additional mRNA sequence :
6 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ANKRD40CL Gene

No ASD Table

Relevant External Links for ANKRD40CL Gene

GeneLoc Exon Structure for
ANKRD40CL

Expression for ANKRD40CL Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ANKRD40CL

No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ANKRD40CL Gene

Orthologs for ANKRD40CL Gene

Evolution for ANKRD40CL Gene

ENSEMBL:
Gene Tree for ANKRD40CL (if available)
TreeFam:
Gene Tree for ANKRD40CL (if available)

No data available for Orthologs for ANKRD40CL Gene

Paralogs for ANKRD40CL Gene

Paralogs for ANKRD40CL Gene

genes like me logo Genes that share paralogs with ANKRD40CL: view

Variants for ANKRD40CL Gene

Additional dbSNP identifiers (rs#s) for ANKRD40CL Gene

Structural Variations from Database of Genomic Variants (DGV) for ANKRD40CL Gene

Variant ID Type Subtype PubMed ID
dgv42n68 CNV loss 17160897
esv2674199 CNV deletion 23128226
esv3640753 CNV loss 21293372

Additional Variant Information for ANKRD40CL Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ANKRD40CL

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for ANKRD40CL Gene

Disorders for ANKRD40CL Gene

Additional Disease Information for ANKRD40CL

No disorders were found for ANKRD40CL Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ANKRD40CL Gene

Publications for ANKRD40CL Gene

  1. Long non-coding RNA Linc00483 accelerated tumorigenesis of cervical cancer by regulating miR-508-3p/RGS17 axis. (PMID: 31454494) Hu P … Cao Y (Life sciences 2019) 3 54
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4 54
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 4 54
  4. Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PMID: 15342556) Suzuki Y … Sugano S (Genome research 2004) 3 54
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for ANKRD40CL Gene

Sources for ANKRD40CL Gene