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ANKRD36BP1 Gene(Pseudogene)

Ankyrin Repeat Domain 36B Pseudogene 1

GCID:
GC01M168214
GIFtS:
22
Genes Participants
UDN Logo

Aliases for ANKRD36BP1 Gene

Subcategory (RNA class) for ANKRD36BP1 Gene

lncRNA

Aliases for ANKRD36BP1 Gene

  • Ankyrin Repeat Domain 36B Pseudogene 1 2 3 5
  • Ankyrin Repeat Domain 26-Like 1 2 3
  • ANKRD26L1 3 4
  • Ankyrin Repeat Domain-Containing Protein 36B Pseudogene 1 4
  • Ankyrin Repeat Domain 36B-Like 1 (Pseudogene) 3
  • Ankyrin Repeat Domain 36B-Like 1 2
  • ANKRD36BL1 3

External Ids for ANKRD36BP1 Gene

ORGUL Members for ANKRD36BP1 Gene

Previous HGNC Symbols for ANKRD36BP1 Gene

  • ANKRD26L1
  • ANKRD36BL1

Previous GeneCards Identifiers for ANKRD36BP1 Gene

  • GC01M139458

Summaries for ANKRD36BP1 Gene

GeneCards Summary for ANKRD36BP1 Gene

ANKRD36BP1 (Ankyrin Repeat Domain 36B Pseudogene 1) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for ANKRD36BP1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ANKRD36BP1 Gene

Genomics for ANKRD36BP1 Gene

Products:

  1. Regulatory Element

Genomic Locations for ANKRD36BP1 Gene

Genomic Locations for ANKRD36BP1 Gene
chr1:168,245,565-168,247,430
(GRCh38/hg38)
Size:
1,866 bases
Orientation:
Minus strand
chr1:168,214,803-168,216,668
(GRCh37/hg19)
Size:
1,866 bases
Orientation:
Minus strand

Genomic View for ANKRD36BP1 Gene

Genes around ANKRD36BP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ANKRD36BP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ANKRD36BP1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for ANKRD36BP1 Gene

No data available for GeneHancer (GH) Regulatory Elements for ANKRD36BP1 Gene

Proteins for ANKRD36BP1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for ANKRD36BP1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96IX9-A26L1_HUMAN
    Recommended name:
    Putative ankyrin repeat domain-containing protein 26-like 1
    Protein Accession:
    Q96IX9

    Protein attributes for ANKRD36BP1 Gene

    Size:
    119 amino acids
    Molecular mass:
    14172 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ANKRD36BP1 Gene

Protein Expression for ANKRD36BP1 Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for ANKRD36BP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ANKRD36BP1 Gene

Domains & Families for ANKRD36BP1 Gene

Protein Domains for ANKRD36BP1 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for ANKRD36BP1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ANKRD36BP1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for ANKRD36BP1 Gene

Function for ANKRD36BP1 Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Gene Ontology (GO) - Molecular Function for ANKRD36BP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 16189514
genes like me logo Genes that share ontologies with ANKRD36BP1: view

Animal Model Products

miRNA for ANKRD36BP1 Gene

miRTarBase miRNAs that target ANKRD36BP1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ANKRD36BP1 Gene

Localization for ANKRD36BP1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ANKRD36BP1 gene
Compartment Confidence
nucleus 3
cytosol 3
plasma membrane 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ANKRD36BP1 Gene

Pathways & Interactions for ANKRD36BP1 Gene

SuperPathways for ANKRD36BP1 Gene

PathCards logo More details on SuperPathways for ANKRD36BP1
No Data Available

Gene Ontology (GO) - Biological Process for ANKRD36BP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ANKRD36BP1 Gene

Drugs & Compounds for ANKRD36BP1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ANKRD36BP1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for ANKRD36BP1 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ANKRD36BP1 Gene

Ankyrin repeat domain 36B pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ANKRD36BP1 Gene

No ASD Table

Relevant External Links for ANKRD36BP1 Gene

GeneLoc Exon Structure for
ANKRD36BP1
ECgene alternative splicing isoforms for
ANKRD36BP1

Expression for ANKRD36BP1 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ANKRD36BP1 Gene

mRNA expression in normal human tissues for ANKRD36BP1 Gene
mRNA expression by GTEx for ANKRD36BP1 GenemRNA expression by BioGPS for ANKRD36BP1 Gene

Protein differential expression in normal tissues from HIPED for ANKRD36BP1 Gene

This gene is overexpressed in Plasma (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for ANKRD36BP1 Gene



Protein tissue co-expression partners for ANKRD36BP1 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of ANKRD36BP1 Gene:

ANKRD36BP1

SOURCE GeneReport for Unigene cluster for ANKRD36BP1 Gene:

Hs.537067
genes like me logo Genes that share expression patterns with ANKRD36BP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ANKRD36BP1 Gene

Orthologs for ANKRD36BP1 Gene

Evolution for ANKRD36BP1 Gene

ENSEMBL:
Gene Tree for ANKRD36BP1 (if available)
TreeFam:
Gene Tree for ANKRD36BP1 (if available)

No data available for Orthologs for ANKRD36BP1 Gene

Paralogs for ANKRD36BP1 Gene

(26) SIMAP similar genes for ANKRD36BP1 Gene using alignment to 1 proteins:

  • A26L1_HUMAN
genes like me logo Genes that share paralogs with ANKRD36BP1: view

No data available for Paralogs for ANKRD36BP1 Gene

Variants for ANKRD36BP1 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for ANKRD36BP1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000756823 -- 168,248,720(-) G/C upstream_transcript_variant
rs1000853216 -- 168,246,446(-) G/A non_coding_transcript_variant
rs1001824305 -- 168,247,724(-) G/A upstream_transcript_variant
rs1001876654 -- 168,248,104(-) C/G upstream_transcript_variant
rs1001938146 -- 168,249,380(-) C/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ANKRD36BP1 Gene

Variant ID Type Subtype PubMed ID
nsv1002007 CNV gain 25217958
nsv1078878 OTHER inversion 25765185
nsv831825 CNV gain+loss 17160897
nsv946490 CNV duplication 23825009

Additional Variant Information for ANKRD36BP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ANKRD36BP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ANKRD36BP1 Gene

Disorders for ANKRD36BP1 Gene

Additional Disease Information for ANKRD36BP1

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for ANKRD36BP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ANKRD36BP1 Gene

Publications for ANKRD36BP1 Gene

  1. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 58
  2. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) Oláh J … Ovádi J (The Journal of biological chemistry 2011) 3 58
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  4. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 4 58
  5. Towards a proteome-scale map of the human protein-protein interaction network. (PMID: 16189514) Rual JF … Vidal M (Nature 2005) 3 58

Products for ANKRD36BP1 Gene

Sources for ANKRD36BP1 Gene

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