Aliases for ANKRD34C-AS1 Gene

Subcategory (RNA class) for ANKRD34C-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ANKRD34C-AS1 Gene

  • ANKRD34C Antisense RNA 1 2 3 5
  • ANKRD34C-AS1 2 5 165
  • NONHSAG017589.2 91
  • HSALNG0107532 164

External Ids for ANKRD34C-AS1 Gene

Previous GeneCards Identifiers for ANKRD34C-AS1 Gene

  • GC15M079195

Summaries for ANKRD34C-AS1 Gene

GeneCards Summary for ANKRD34C-AS1 Gene

ANKRD34C-AS1 (ANKRD34C Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ANKRD34C-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ANKRD34C-AS1 Gene

Genomics for ANKRD34C-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ANKRD34C-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J079283 Promoter 1.3 EPDnew Ensembl 600.7 +0.0 48 0.2 REST TFE3 TARDBP ZNF143 PATZ1 EZH2 ZNF341 ZNF512B ZBTB26 ZBTB48 ANKRD34C ANKRD34C-AS1 lnc-RASGRF1-6 TMED3
GH15J079178 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.1 +104.7 104744 2 RNF2 CREB1 GATAD2A ZNF629 LEF1 ZNF692 JUND MTA2 ZIC2 ZSCAN4 ENSG00000259562 IREB2 RASGRF1 PSMA4 lnc-RASGRF1-5 MIR184 ANKRD34C ANKRD34C-AS1
GH15J079192 Enhancer 1 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.2 +91.1 91148 2 ZNF316 MAFF USF1 MAFK ZFX EZH2 RASGRF1 LOC100129540 ENSG00000261762 MIR184 lnc-RASGRF1-5 ANKRD34C ANKRD34C-AS1
GH15J079168 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.1 +112.9 112933 5.4 CTCF PRDM10 TFE3 RFX1 PRDM1 ZIC2 POLR2A ZNF600 SOX6 MNT RASGRF1 lnc-RASGRF1-5 MIR184 ANKRD34C ANKRD34C-AS1
GH15J079209 Promoter 0.7 Ensembl 0.2 +74.1 74148 0.4 CTCF TEAD4 PKNOX1 NRF1 EZH2 ZNF143 MEIS2 RAD21 CBFA2T3 MIR184 lnc-ANKRD34C-1 ANKRD34C ANKRD34C-AS1 RASGRF1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ANKRD34C-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ANKRD34C-AS1 Gene

Genomic Locations for ANKRD34C-AS1 Gene
chr15:79,141,939-79,283,949
(GRCh38/hg38)
Size:
142,011 bases
Orientation:
Minus strand
chr15:79,484,049-79,576,287
(GRCh37/hg19)
Size:
92,239 bases
Orientation:
Minus strand

Genomic View for ANKRD34C-AS1 Gene

Genes around ANKRD34C-AS1 on UCSC Golden Path with GeneCards custom track
ANKRD34C-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ANKRD34C-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ANKRD34C-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ANKRD34C-AS1 Gene

Proteins for ANKRD34C-AS1 Gene

Post-translational modifications for ANKRD34C-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ANKRD34C-AS1 Gene

Domains & Families for ANKRD34C-AS1 Gene

Gene Families for ANKRD34C-AS1 Gene

genes like me logo Genes that share domains with ANKRD34C-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ANKRD34C-AS1 Gene

Function for ANKRD34C-AS1 Gene

Phenotypes From GWAS Catalog for ANKRD34C-AS1 Gene

Phenotypes for ANKRD34C-AS1 Gene

genes like me logo Genes that share phenotypes with ANKRD34C-AS1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ANKRD34C-AS1 Gene

Localization for ANKRD34C-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ANKRD34C-AS1 Gene

Pathways & Interactions for ANKRD34C-AS1 Gene

PathCards logo

SuperPathways for ANKRD34C-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ANKRD34C-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ANKRD34C-AS1 Gene

Drugs & Compounds for ANKRD34C-AS1 Gene

No Compound Related Data Available

Transcripts for ANKRD34C-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ANKRD34C-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075B35A_9606 lncRNA 693 5

HGNC: 48618,

RefSeq: NR_038997,

LncBook: HSALNT0223257,

LNCipedia: ANKRD34C-AS1:3,

NONCODE: NONHSAT047641.2,

URS0000619EEF_9606 lncRNA 576 4

Ensembl: ENST00000560452 (view in UCSC) ,

LncBook: HSALNT0223272,

LNCipedia: ANKRD34C-AS1:9,

NONCODE: NONHSAT047649.2,

URS000004DEF5_9606 lncRNA 565 4

Ensembl: ENST00000558297 (view in UCSC) ,

LncBook: HSALNT0223273,

LNCipedia: ANKRD34C-AS1:1,

NONCODE: NONHSAT047651.2,

URS00005D83C4_9606 lncRNA 546 4

Ensembl: ENST00000560732 (view in UCSC) ,

LncBook: HSALNT0223269,

LNCipedia: ANKRD34C-AS1:7,

NONCODE: NONHSAT047647.2,

URS0000121278_9606 lncRNA 528 4

Ensembl: ENST00000559225 (view in UCSC) ,

LncBook: HSALNT0223259,

LNCipedia: ANKRD34C-AS1:4,

NONCODE: NONHSAT047643.2,

ANKRD34C-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ANKRD34C-AS1 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for ANKRD34C-AS1 Gene

No ASD Table

Relevant External Links for ANKRD34C-AS1 Gene

GeneLoc Exon Structure for
ANKRD34C-AS1

Expression for ANKRD34C-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ANKRD34C-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ANKRD34C-AS1

genes like me logo Genes that share expression patterns with ANKRD34C-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ANKRD34C-AS1 Gene

Orthologs for ANKRD34C-AS1 Gene

Evolution for ANKRD34C-AS1 Gene

ENSEMBL:
Gene Tree for ANKRD34C-AS1 (if available)
TreeFam:
Gene Tree for ANKRD34C-AS1 (if available)

No data available for Orthologs for ANKRD34C-AS1 Gene

Paralogs for ANKRD34C-AS1 Gene

No data available for Paralogs for ANKRD34C-AS1 Gene

Variants for ANKRD34C-AS1 Gene

Additional dbSNP identifiers (rs#s) for ANKRD34C-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for ANKRD34C-AS1 Gene

Variant ID Type Subtype PubMed ID
esv1000643 CNV deletion 20482838
esv2273825 CNV deletion 18987734
esv24130 CNV loss 19812545
esv2485584 CNV deletion 19546169
esv2760042 CNV gain 17122850
esv2760043 CNV loss 17122850
esv2760397 CNV loss 21179565
esv3636996 CNV loss 21293372
esv3636997 CNV loss 21293372
nsv1053328 CNV loss 25217958
nsv442378 CNV loss 18776908
nsv473519 CNV novel sequence insertion 20440878
nsv478133 CNV novel sequence insertion 20440878
nsv517612 CNV loss 19592680
nsv817699 CNV loss 17921354
nsv9283 CNV loss 18304495
nsv977742 CNV duplication 23825009

Additional Variant Information for ANKRD34C-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ANKRD34C-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for ANKRD34C-AS1 Gene

Disorders for ANKRD34C-AS1 Gene

No disorders were found for ANKRD34C-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ANKRD34C-AS1 Gene

Publications for ANKRD34C-AS1 Gene

  1. Heritability and genetic association analysis of cognition in the Diabetes Heart Study. (PMID: 24684796) Cox AJ … Bowden DW (Neurobiology of aging 2014) 3
  2. Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. (PMID: 23382691) Lauc G … Rudan I (PLoS genetics 2013) 3
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

Products for ANKRD34C-AS1 Gene

Sources for ANKRD34C-AS1 Gene