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Aliases for ANKRD20A5P Gene

Aliases for ANKRD20A5P Gene

  • Ankyrin Repeat Domain 20 Family Member A5, Pseudogene 2 3 5
  • ANKRD20A5 3 4
  • Putative Ankyrin Repeat Domain-Containing Protein 20A-Like Protein MGC26718 3
  • Ankyrin Repeat Domain-Containing Protein 20A-Like Protein MGC26718 3
  • Ankyrin Repeat Domain-Containing Protein 20A5 Pseudogene 4
  • Putative Ankyrin Repeat Domain-Containing Protein 20A5 3
  • Ankyrin Repeat Domain 20 Family, Member A5, Pseudogene 2
  • Ankyrin Repeat Domain 20 Family, Member A4 Pseudogene 3
  • Ankyrin Repeat Domain 20 Family, Member A5 2

External Ids for ANKRD20A5P Gene

Previous HGNC Symbols for ANKRD20A5P Gene

  • ANKRD20A5

Previous GeneCards Identifiers for ANKRD20A5P Gene

  • GC18U900665

Summaries for ANKRD20A5P Gene

GeneCards Summary for ANKRD20A5P Gene

ANKRD20A5P (Ankyrin Repeat Domain 20 Family Member A5, Pseudogene) is a Pseudogene.

Additional gene information for ANKRD20A5P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ANKRD20A5P Gene

Genomics for ANKRD20A5P Gene

GeneHancer (GH) Regulatory Elements for ANKRD20A5P Gene

Promoters and enhancers for ANKRD20A5P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J014178 Promoter/Enhancer 1.4 Ensembl ENCODE 658.4 +0.2 204 1.4 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF48 SLC30A9 GLIS2 ELK1 SP3 ANKRD20A5P GC18P014188 GC18P014189 GC18P014193 GC18P014203 GC18P014204 PIR46574
GH18J014189 Enhancer 0.8 ENCODE 0.4 +11.2 11160 1.9 ELF3 PKNOX1 FOXA2 BMI1 BATF RARA ZNF366 ATF7 FOS ETV6 GC18P014191 RNU6-316P GC18P014188 GC18P014189 GC18P014193 GC18P014203 GC18P014204 PIR46574 ANKRD20A5P
GH18J014190 Enhancer 0.6 ENCODE 0.4 +10.1 10120 0.2 SMARCE1 FOXA2 ZNF189 MNT FOXA1 GATA3 ZNF366 ZNF692 ZNF629 FOS GC18P014188 GC18P014189 GC18P014191 GC18P014193 GC18P014203 GC18P014204 PIR46574 RNU6-316P ANKRD20A5P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ANKRD20A5P on UCSC Golden Path with GeneCards custom track

Genomic Locations for ANKRD20A5P Gene

Genomic Locations for ANKRD20A5P Gene
chr18:14,179,097-14,252,140
(GRCh38/hg38)
Size:
73,044 bases
Orientation:
Plus strand
chr18:14,179,096-14,249,455
(GRCh37/hg19)
Size:
70,360 bases
Orientation:
Plus strand

Genomic View for ANKRD20A5P Gene

Genes around ANKRD20A5P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ANKRD20A5P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ANKRD20A5P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ANKRD20A5P Gene

Proteins for ANKRD20A5P Gene

  • Protein details for ANKRD20A5P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A0PJZ0-A20A5_HUMAN
    Recommended name:
    Putative ankyrin repeat domain-containing protein 20A5
    Protein Accession:
    A0PJZ0
    Secondary Accessions:
    • Q4G1B6

    Protein attributes for ANKRD20A5P Gene

    Size:
    165 amino acids
    Molecular mass:
    18446 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH22023.1; Type=Frameshift; Positions=44; Evidence={ECO:0000305};

neXtProt entry for ANKRD20A5P Gene

Post-translational modifications for ANKRD20A5P Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ANKRD20A5P Gene

Domains & Families for ANKRD20A5P Gene

Protein Domains for ANKRD20A5P Gene

Suggested Antigen Peptide Sequences for ANKRD20A5P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with ANKRD20A5P: view

No data available for Gene Families and UniProtKB/Swiss-Prot for ANKRD20A5P Gene

Function for ANKRD20A5P Gene

Phenotypes for ANKRD20A5P Gene

genes like me logo Genes that share phenotypes with ANKRD20A5P: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ANKRD20A5P

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ANKRD20A5P Gene

Localization for ANKRD20A5P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ANKRD20A5P Gene

Pathways & Interactions for ANKRD20A5P Gene

SuperPathways for ANKRD20A5P Gene

No Data Available

Interacting Proteins for ANKRD20A5P Gene

Gene Ontology (GO) - Biological Process for ANKRD20A5P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ANKRD20A5P Gene

Drugs & Compounds for ANKRD20A5P Gene

No Compound Related Data Available

Transcripts for ANKRD20A5P Gene

mRNA/cDNA for ANKRD20A5P Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(11) Selected AceView cDNA sequences:
(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ANKRD20A5P Gene

Ankyrin repeat domain 20 family, member A5, pseudogene:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ANKRD20A5P

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ANKRD20A5P Gene

No ASD Table

Relevant External Links for ANKRD20A5P Gene

GeneLoc Exon Structure for
ANKRD20A5P
ECgene alternative splicing isoforms for
ANKRD20A5P

Expression for ANKRD20A5P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ANKRD20A5P Gene

mRNA differential expression in normal tissues according to GTEx for ANKRD20A5P Gene

This gene is overexpressed in Esophagus - Mucosa (x12.2) and Testis (x7.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for ANKRD20A5P Gene



NURSA nuclear receptor signaling pathways regulating expression of ANKRD20A5P Gene:

ANKRD20A5P

SOURCE GeneReport for Unigene cluster for ANKRD20A5P Gene:

Hs.632352
genes like me logo Genes that share expression patterns with ANKRD20A5P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ANKRD20A5P Gene

Orthologs for ANKRD20A5P Gene

Evolution for ANKRD20A5P Gene

ENSEMBL:
Gene Tree for ANKRD20A5P (if available)
TreeFam:
Gene Tree for ANKRD20A5P (if available)

No data available for Orthologs for ANKRD20A5P Gene

Paralogs for ANKRD20A5P Gene

(22) SIMAP similar genes for ANKRD20A5P Gene using alignment to 1 proteins:

  • A20A5_HUMAN
genes like me logo Genes that share paralogs with ANKRD20A5P: view

No data available for Paralogs for ANKRD20A5P Gene

Variants for ANKRD20A5P Gene

Sequence variations from dbSNP and Humsavar for ANKRD20A5P Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1000000093 -- 14,206,583(+) A/G intron_variant
rs1000065305 -- 14,207,838(+) G/C intron_variant
rs1000159362 -- 14,211,542(+) G/T intron_variant
rs1000302242 -- 14,194,571(+) T/C intron_variant
rs1000463629 -- 14,211,344(+) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ANKRD20A5P Gene

Variant ID Type Subtype PubMed ID
nsv978647 CNV duplication 23825009
nsv978646 CNV duplication 23825009
nsv978645 CNV duplication 23825009
nsv978644 CNV duplication 23825009
nsv962895 CNV duplication 23825009
nsv962894 CNV duplication 23825009
nsv962893 CNV duplication 23825009
nsv9612 CNV gain 18304495
nsv961069 CNV duplication 23825009
nsv960670 CNV duplication 23825009
nsv960668 CNV duplication 23825009
nsv960667 CNV duplication 23825009
nsv960666 CNV duplication 23825009
nsv960665 CNV duplication 23825009
nsv960657 CNV duplication 23825009
nsv952416 CNV duplication 24416366
nsv576532 CNV gain 21841781
nsv576531 CNV gain 21841781
nsv525471 CNV gain 19592680
nsv520945 CNV loss 19592680
nsv1160510 CNV duplication 26073780
nsv1153345 CNV duplication 26484159
nsv1149465 CNV deletion 26484159
nsv1132459 CNV duplication 24896259
nsv1078420 CNV duplication 25765185
nsv1066142 CNV loss 25217958
esv3893076 CNV gain+loss 25118596
esv3641875 CNV loss 21293372
esv3641874 CNV loss 21293372
esv3641872 CNV loss 21293372
esv3555095 CNV deletion 23714750
esv2760500 CNV loss 21179565
esv2758715 CNV gain 17122850
dgv39n82 CNV duplication 23825009
dgv3322n100 CNV loss 25217958
dgv3321n100 CNV loss 25217958
dgv1854e59 CNV duplication 20981092
dgv129n111 CNV deletion 26073780

Additional Variant Information for ANKRD20A5P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ANKRD20A5P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ANKRD20A5P Gene

Disorders for ANKRD20A5P Gene

Additional Disease Information for ANKRD20A5P

No disorders were found for ANKRD20A5P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ANKRD20A5P Gene

Publications for ANKRD20A5P Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  2. Systematic identification of pathological lamin A interactors. (PMID: 24623722) Dittmer TA … Misteli T (Molecular biology of the cell 2014) 3 58
  3. DNA sequence and analysis of human chromosome 18. (PMID: 16177791) Nusbaum C … Lander ES (Nature 2005) 4 58
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  5. Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PMID: 15342556) Suzuki Y … Sugano S (Genome research 2004) 3 58

Products for ANKRD20A5P Gene

Sources for ANKRD20A5P Gene

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