Aliases for ANKRD20A5P Gene

Aliases for ANKRD20A5P Gene

  • Ankyrin Repeat Domain 20 Family Member A5, Pseudogene 2 3 5
  • Putative Ankyrin Repeat Domain-Containing Protein 20A5 3 4
  • ANKRD20A5 3 4
  • Putative Ankyrin Repeat Domain-Containing Protein 20A-Like Protein MGC26718 3
  • Ankyrin Repeat Domain-Containing Protein 20A-Like Protein MGC26718 3
  • Ankyrin Repeat Domain-Containing Protein 20A5 Pseudogene 4
  • Ankyrin Repeat Domain 20 Family, Member A5, Pseudogene 2
  • Ankyrin Repeat Domain 20 Family, Member A5 2
  • ANKRD20A5P 5
  • MGC26718 2

External Ids for ANKRD20A5P Gene

Previous HGNC Symbols for ANKRD20A5P Gene

  • ANKRD20A5

Previous GeneCards Identifiers for ANKRD20A5P Gene

  • GC18U900665

Summaries for ANKRD20A5P Gene

GeneCards Summary for ANKRD20A5P Gene

ANKRD20A5P (Ankyrin Repeat Domain 20 Family Member A5, Pseudogene) is a Pseudogene.

Additional gene information for ANKRD20A5P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ANKRD20A5P Gene

Genomics for ANKRD20A5P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ANKRD20A5P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J014178 Promoter/Enhancer 1.6 Ensembl ENCODE CraniofacialAtlas 608.4 +0.2 204 1.8 GATAD2A PRDM10 ZNF629 TFE3 CTCF ZNF692 ZIC2 RXRB PATZ1 RAD21 ANKRD20A5P lnc-MC5R-1 piR-61212-001 ZNF519 POTEC
GH18J014190 Enhancer 1 Ensembl ENCODE 5.5 +10.7 10712 2.8 GATAD2A ATF7 ZNF629 SOX13 ZNF692 RXRB IKZF2 PKNOX1 CEBPA TCF7 RF00026-467 RNU6-316P ANKRD20A5P piR-52575-002 lnc-MC5R-1 ZNF519 POTEC
GH18J014236 Enhancer 0.5 Ensembl 7.5 +57.4 57404 0.6 PRDM10 RELA SCRT2 DPF2 RELB ZBTB48 TAL1 ANKRD20A5P ENSG00000283294 piR-30951-002 piR-53431-301 ZNF519 POTEC
GH18J014173 Enhancer 0.3 Ensembl 6.5 -5.6 -5596 0.6 HNF4A ANKRD20A5P piR-40110-306 lnc-MC5R-1 ZNF519 POTEC
GH18J014174 Enhancer 0.2 Ensembl 0.7 -4.3 -4296 0.4 ANKRD20A5P lnc-MC5R-1 piR-40110-306 ZNF519 POTEC
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ANKRD20A5P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ANKRD20A5P Gene

Genomic Locations for ANKRD20A5P Gene
chr18:14,179,097-14,252,140
(GRCh38/hg38)
Size:
73,044 bases
Orientation:
Plus strand
chr18:14,179,096-14,249,455
(GRCh37/hg19)
Size:
70,360 bases
Orientation:
Plus strand

Genomic View for ANKRD20A5P Gene

Genes around ANKRD20A5P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ANKRD20A5P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ANKRD20A5P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ANKRD20A5P Gene

Proteins for ANKRD20A5P Gene

  • Protein details for ANKRD20A5P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A0PJZ0-A20A5_HUMAN
    Recommended name:
    Putative ankyrin repeat domain-containing protein 20A5
    Protein Accession:
    A0PJZ0
    Secondary Accessions:
    • Q4G1B6

    Protein attributes for ANKRD20A5P Gene

    Size:
    165 amino acids
    Molecular mass:
    18446 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH22023.1; Type=Frameshift; Evidence={ECO:0000305};

neXtProt entry for ANKRD20A5P Gene

Post-translational modifications for ANKRD20A5P Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ANKRD20A5P Gene

Domains & Families for ANKRD20A5P Gene

Protein Domains for ANKRD20A5P Gene

Suggested Antigen Peptide Sequences for ANKRD20A5P Gene

GenScript: Design optimal peptide antigens:
  • Ankyrin repeat domain-containing protein 20A5 pseudogene (A20A5_HUMAN)
  • Similar to ankyrin repeat domain 20A, isoform CRA_a (D3DUJ6_HUMAN)
genes like me logo Genes that share domains with ANKRD20A5P: view

No data available for Gene Families , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ANKRD20A5P Gene

Function for ANKRD20A5P Gene

Phenotypes for ANKRD20A5P Gene

genes like me logo Genes that share phenotypes with ANKRD20A5P: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ANKRD20A5P

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ANKRD20A5P Gene

Localization for ANKRD20A5P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ANKRD20A5P Gene

Pathways & Interactions for ANKRD20A5P Gene

PathCards logo

SuperPathways for ANKRD20A5P Gene

No Data Available

Interacting Proteins for ANKRD20A5P Gene

Selected Interacting proteins: A0PJZ0-A20A5_HUMAN for ANKRD20A5P Gene via IID

Symbol External ID(s) Details
LMNA

Gene Ontology (GO) - Biological Process for ANKRD20A5P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ANKRD20A5P Gene

Drugs & Compounds for ANKRD20A5P Gene

No Compound Related Data Available

Transcripts for ANKRD20A5P Gene

mRNA/cDNA for ANKRD20A5P Gene

1 REFSEQ mRNAs :
5 NCBI additional mRNA sequence :
8 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ANKRD20A5P

Alternative Splicing Database (ASD) splice patterns (SP) for ANKRD20A5P Gene

No ASD Table

Relevant External Links for ANKRD20A5P Gene

GeneLoc Exon Structure for
ANKRD20A5P

Expression for ANKRD20A5P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ANKRD20A5P Gene

mRNA differential expression in normal tissues according to GTEx for ANKRD20A5P Gene

This gene is overexpressed in Esophagus - Mucosa (x12.2) and Testis (x7.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for ANKRD20A5P Gene



Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ANKRD20A5P

SOURCE GeneReport for Unigene cluster for ANKRD20A5P Gene:

Hs.632352
genes like me logo Genes that share expression patterns with ANKRD20A5P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ANKRD20A5P Gene

Orthologs for ANKRD20A5P Gene

Evolution for ANKRD20A5P Gene

ENSEMBL:
Gene Tree for ANKRD20A5P (if available)
TreeFam:
Gene Tree for ANKRD20A5P (if available)

No data available for Orthologs for ANKRD20A5P Gene

Paralogs for ANKRD20A5P Gene

(22) SIMAP similar genes for ANKRD20A5P Gene using alignment to 1 proteins:

  • A20A5_HUMAN
genes like me logo Genes that share paralogs with ANKRD20A5P: view

No data available for Paralogs for ANKRD20A5P Gene

Variants for ANKRD20A5P Gene

Structural Variations from Database of Genomic Variants (DGV) for ANKRD20A5P Gene

Variant ID Type Subtype PubMed ID
dgv129n111 CNV deletion 26073780
dgv1854e59 CNV duplication 20981092
dgv3321n100 CNV loss 25217958
dgv3322n100 CNV loss 25217958
dgv39n82 CNV duplication 23825009
esv2758715 CNV gain 17122850
esv2760500 CNV loss 21179565
esv3555095 CNV deletion 23714750
esv3641872 CNV loss 21293372
esv3641874 CNV loss 21293372
esv3641875 CNV loss 21293372
esv3893076 CNV gain+loss 25118596
nsv1066142 CNV loss 25217958
nsv1078420 CNV duplication 25765185
nsv1132459 CNV duplication 24896259
nsv1149465 CNV deletion 26484159
nsv1153345 CNV duplication 26484159
nsv1160510 CNV duplication 26073780
nsv520945 CNV loss 19592680
nsv525471 CNV gain 19592680
nsv576531 CNV gain 21841781
nsv576532 CNV gain 21841781
nsv952416 CNV duplication 24416366
nsv960657 CNV duplication 23825009
nsv960665 CNV duplication 23825009
nsv960666 CNV duplication 23825009
nsv960667 CNV duplication 23825009
nsv960668 CNV duplication 23825009
nsv960670 CNV duplication 23825009
nsv961069 CNV duplication 23825009
nsv9612 CNV gain 18304495
nsv962893 CNV duplication 23825009
nsv962894 CNV duplication 23825009
nsv962895 CNV duplication 23825009
nsv978644 CNV duplication 23825009
nsv978645 CNV duplication 23825009
nsv978646 CNV duplication 23825009
nsv978647 CNV duplication 23825009

Additional Variant Information for ANKRD20A5P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ANKRD20A5P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for ANKRD20A5P Gene

Disorders for ANKRD20A5P Gene

Additional Disease Information for ANKRD20A5P

No disorders were found for ANKRD20A5P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ANKRD20A5P Gene

Publications for ANKRD20A5P Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4
  2. Systematic identification of pathological lamin A interactors. (PMID: 24623722) Dittmer TA … Misteli T (Molecular biology of the cell 2014) 3
  3. DNA sequence and analysis of human chromosome 18. (PMID: 16177791) Nusbaum C … Lander ES (Nature 2005) 4
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  5. Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PMID: 15342556) Suzuki Y … Sugano S (Genome research 2004) 3

Products for ANKRD20A5P Gene

Sources for ANKRD20A5P Gene