Aliases for ANKRD20A4P Gene

Aliases for ANKRD20A4P Gene

  • Ankyrin Repeat Domain 20 Family Member A4, Pseudogene 2 3 5
  • Ankyrin Repeat Domain 20 Family Member A4 2 3
  • ANKRD20A4 3 4
  • Ankyrin Repeat Domain-Containing Protein 20A4 Pseudogene 4
  • Putative Ankyrin Repeat Domain-Containing Protein 20A4 4
  • Ankyrin Repeat Domain-Containing Protein 20A4 3
  • Ankyrin Repeat Domain 20 Family, Member A4 2
  • OTTHUMG00000066855 2
  • ANKRD20A4P 5

External Ids for ANKRD20A4P Gene

Previous HGNC Symbols for ANKRD20A4P Gene

  • ANKRD20A4

Previous GeneCards Identifiers for ANKRD20A4P Gene

  • GC09P064397

Summaries for ANKRD20A4P Gene

GeneCards Summary for ANKRD20A4P Gene

ANKRD20A4P (Ankyrin Repeat Domain 20 Family Member A4, Pseudogene) is a Pseudogene. An important paralog of this gene is ANKRD20A2P.

Additional gene information for ANKRD20A4P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ANKRD20A4P Gene

Genomics for ANKRD20A4P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ANKRD20A4P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J064369 Promoter 1.2 EPDnew Ensembl 600.7 -0.2 -193 2.4 LARP7 ZNF143 CTCF TRIM22 ZNF561 ZBTB44 ZBTB20 ZSCAN29 SP2 RAD21 AB372696-003 ANKRD20A4-ANKRD20A20P ANKRD20A4P NONHSAG052292.2-003 lnc-FOXD4L5-12 piR-42891-004 LOC107987067
GH09J064411 Enhancer 0.2 Ensembl 0.3 +42.5 42507 0.2 piR-59853-003 ANKRD20A20P ANKRD20A4-ANKRD20A20P ANKRD20A4P LOC107987067
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ANKRD20A4P on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for ANKRD20A4P

Genomic Locations for ANKRD20A4P Gene

Genomic Locations for ANKRD20A4P Gene
chr9:64,369,394-64,413,142
(GRCh38/hg38)
Size:
43,749 bases
Orientation:
Plus strand
chr9:69,381,812-69,425,560
(GRCh37/hg19)
Size:
43,749 bases
Orientation:
Plus strand

Genomic View for ANKRD20A4P Gene

Genes around ANKRD20A4P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ANKRD20A4P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ANKRD20A4P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ANKRD20A4P Gene

Proteins for ANKRD20A4P Gene

  • Protein details for ANKRD20A4P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q4UJ75-A20A4_HUMAN
    Recommended name:
    Putative ankyrin repeat domain-containing protein 20A4
    Protein Accession:
    Q4UJ75

    Protein attributes for ANKRD20A4P Gene

    Size:
    823 amino acids
    Molecular mass:
    94149 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ANKRD20A4P Gene

Post-translational modifications for ANKRD20A4P Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ANKRD20A4P Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for ANKRD20A4P Gene

Domains & Families for ANKRD20A4P Gene

Gene Families for ANKRD20A4P Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for ANKRD20A4P Gene

Suggested Antigen Peptide Sequences for ANKRD20A4P Gene

GenScript: Design optimal peptide antigens:
  • Ankyrin repeat domain-containing protein 20A4 (A20A4_HUMAN)
genes like me logo Genes that share domains with ANKRD20A4P: view

No data available for Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ANKRD20A4P Gene

Function for ANKRD20A4P Gene

Gene Ontology (GO) - Molecular Function for ANKRD20A4P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IEA --
genes like me logo Genes that share ontologies with ANKRD20A4P: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ANKRD20A4P

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ANKRD20A4P Gene

Localization for ANKRD20A4P Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ANKRD20A4P gene
Compartment Confidence
nucleus 2
cytosol 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ANKRD20A4P Gene

Pathways & Interactions for ANKRD20A4P Gene

PathCards logo

SuperPathways for ANKRD20A4P Gene

No Data Available

Gene Ontology (GO) - Biological Process for ANKRD20A4P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ANKRD20A4P Gene

Drugs & Compounds for ANKRD20A4P Gene

No Compound Related Data Available

Transcripts for ANKRD20A4P Gene

mRNA/cDNA for ANKRD20A4P Gene

1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ANKRD20A4P

Alternative Splicing Database (ASD) splice patterns (SP) for ANKRD20A4P Gene

No ASD Table

Relevant External Links for ANKRD20A4P Gene

GeneLoc Exon Structure for
ANKRD20A4P

Expression for ANKRD20A4P Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ANKRD20A4P

SOURCE GeneReport for Unigene cluster for ANKRD20A4P Gene:

Hs.645502
No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ANKRD20A4P Gene

Orthologs for ANKRD20A4P Gene

This gene was present in the common ancestor of chordates.

Orthologs for ANKRD20A4P Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia LOC738297 30
  • 98.5 (n)
-- 31
  • 97 (a)
OneToMany
Dog
(Canis familiaris)
Mammalia -- 31
  • 42 (a)
ManyToMany
-- 31
  • 41 (a)
ManyToMany
-- 31
  • 39 (a)
ManyToMany
-- 31
  • 29 (a)
ManyToMany
-- 31
  • 16 (a)
ManyToMany
-- 31
  • 16 (a)
ManyToMany
-- 31
  • 15 (a)
ManyToMany
-- 31
  • 14 (a)
ManyToMany
Mouse
(Mus musculus)
Mammalia Gm1758 31
  • 36 (a)
ManyToMany
Cow
(Bos Taurus)
Mammalia -- 31
  • 33 (a)
OneToMany
Platypus
(Ornithorhynchus anatinus)
Mammalia -- 31
  • 11 (a)
OneToMany
Chicken
(Gallus gallus)
Aves -- 31
  • 18 (a)
OneToMany
Lizard
(Anolis carolinensis)
Reptilia -- 31
  • 41 (a)
ManyToMany
Zebrafish
(Danio rerio)
Actinopterygii ANKRD7 31
  • 9 (a)
OneToMany
Species where no ortholog for ANKRD20A4P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for ANKRD20A4P Gene

ENSEMBL:
Gene Tree for ANKRD20A4P (if available)
TreeFam:
Gene Tree for ANKRD20A4P (if available)

Paralogs for ANKRD20A4P Gene

genes like me logo Genes that share paralogs with ANKRD20A4P: view

Variants for ANKRD20A4P Gene

Structural Variations from Database of Genomic Variants (DGV) for ANKRD20A4P Gene

Variant ID Type Subtype PubMed ID
dgv4353e59 CNV duplication 20981092
dgv7653n100 CNV gain 25217958
dgv7654n100 CNV gain 25217958
esv3345323 CNV duplication 20981092
esv3354240 CNV duplication 20981092
esv3365575 CNV duplication 20981092
esv3367902 CNV duplication 20981092
esv3385387 CNV duplication 20981092
esv3390584 CNV duplication 20981092
esv3415864 CNV duplication 20981092
esv3420472 CNV duplication 20981092
esv3430467 CNV duplication 20981092
esv3431814 CNV duplication 20981092
esv3446655 CNV duplication 20981092
nsv1115809 CNV duplication 24896259
nsv1129003 CNV duplication 24896259
nsv1132728 CNV duplication 24896259
nsv1141631 CNV duplication 24896259
nsv1146991 CNV duplication 26484159
nsv1151388 CNV duplication 26484159
nsv1152173 CNV duplication 26484159
nsv951747 CNV duplication 24416366
nsv969570 CNV duplication 23825009
nsv969572 CNV duplication 23825009
nsv969573 CNV duplication 23825009
nsv969667 CNV duplication 23825009
nsv969668 CNV duplication 23825009
nsv969670 CNV duplication 23825009
nsv969671 CNV duplication 23825009
nsv973263 CNV duplication 23825009
nsv973266 CNV duplication 23825009
nsv973267 CNV duplication 23825009
nsv973268 CNV duplication 23825009
nsv973344 CNV duplication 23825009
nsv973346 CNV duplication 23825009
nsv973347 CNV duplication 23825009
nsv973614 CNV duplication 23825009
nsv973615 CNV duplication 23825009
nsv973616 CNV duplication 23825009
nsv973617 CNV duplication 23825009
nsv973618 CNV duplication 23825009
nsv973619 CNV duplication 23825009
nsv973709 CNV duplication 23825009
nsv973711 CNV duplication 23825009
nsv973712 CNV duplication 23825009
nsv982243 CNV duplication 23825009
nsv982292 CNV duplication 23825009
nsv982422 CNV duplication 23825009
nsv982424 CNV duplication 23825009
nsv982425 CNV duplication 23825009
nsv982508 CNV duplication 23825009
nsv982510 CNV duplication 23825009
nsv982511 CNV duplication 23825009
nsv982513 CNV duplication 23825009

Variation tolerance for ANKRD20A4P Gene

Gene Damage Index Score: 3.66; 56.93% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for ANKRD20A4P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ANKRD20A4P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Additional dbSNP identifiers (rs#s) for ANKRD20A4P Gene

Disorders for ANKRD20A4P Gene

No disorders were found for ANKRD20A4P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ANKRD20A4P Gene

Publications for ANKRD20A4P Gene

  1. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray SJ … Dunham I (Nature 2004) 3 4

Products for ANKRD20A4P Gene

Sources for ANKRD20A4P Gene