Aliases for ANKRD20A3P Gene

Aliases for ANKRD20A3P Gene

  • Ankyrin Repeat Domain 20 Family Member A3, Pseudogene 2 3 5
  • Ankyrin Repeat Domain 20 Family Member A3 2 3
  • ANKRD20A3 3 4
  • Ankyrin Repeat Domain-Containing Protein 20A3 Pseudogene 4
  • Putative Ankyrin Repeat Domain-Containing Protein 20A3 4
  • Ankyrin Repeat Domain-Containing Protein 20A3 3
  • Ankyrin Repeat Domain 20 Family, Member A3 2
  • Ankyrin Repeat Domain 20A-Related 3
  • ANKRD20A3P 5

External Ids for ANKRD20A3P Gene

Previous HGNC Symbols for ANKRD20A3P Gene

  • ANKRD20A3

Previous GeneCards Identifiers for ANKRD20A3P Gene

  • GC09M066331

Summaries for ANKRD20A3P Gene

GeneCards Summary for ANKRD20A3P Gene

ANKRD20A3P (Ankyrin Repeat Domain 20 Family Member A3, Pseudogene) is a Pseudogene. Diseases associated with ANKRD20A3P include Asbestos-Related Lung Carcinoma. An important paralog of this gene is ANKRD20A2P.

Additional gene information for ANKRD20A3P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ANKRD20A3P Gene

Genomics for ANKRD20A3P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ANKRD20A3P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J066179 Promoter 0.3 EPDnew 600.7 +0.0 4 0.1 ANKRD20A3P lnc-ANKRD20A3-50 LOC112267859 ZNF658
GH09J066152 Promoter 0.3 Ensembl 0.3 +26.0 25973 2.6 AB372696-004 piR-42891-005 ANKRD20A3P LOC112267859 ZNF658
GH09J066097 Enhancer 0.2 Ensembl 0.2 +81.6 81573 0.6 piR-57948-003 piR-61304-004 ENSG00000286945 ANKRD20A3P LOC112267859 ZNF658
GH09J066100 Enhancer 0.2 Ensembl 0.2 +79.4 79373 1.4 piR-57948-003 piR-59853-004 ENSG00000286945 ANKRD20A3P LOC112267859 ZNF658
GH09J066101 Enhancer 0.2 Ensembl 0.2 +78.3 78273 0.4 piR-57948-003 piR-59853-004 ENSG00000286945 ANKRD20A3P LOC112267859 ZNF658
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ANKRD20A3P on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for ANKRD20A3P

Genomic Locations for ANKRD20A3P Gene

Genomic Locations for ANKRD20A3P Gene
chr9:66,093,946-66,179,474
(GRCh38/hg38)
Size:
85,529 bases
Orientation:
Minus strand
chr9:43,064,966-43,133,544
(GRCh37/hg19)
Size:
68,579 bases
Orientation:
Minus strand

Genomic View for ANKRD20A3P Gene

Genes around ANKRD20A3P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ANKRD20A3P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ANKRD20A3P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ANKRD20A3P Gene

Proteins for ANKRD20A3P Gene

  • Protein details for ANKRD20A3P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5VUR7-A20A3_HUMAN
    Recommended name:
    Putative ankyrin repeat domain-containing protein 20A3
    Protein Accession:
    Q5VUR7

    Protein attributes for ANKRD20A3P Gene

    Size:
    823 amino acids
    Molecular mass:
    94108 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ANKRD20A3P Gene

Post-translational modifications for ANKRD20A3P Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ANKRD20A3P Gene

No data available for DME Specific Peptides for ANKRD20A3P Gene

Domains & Families for ANKRD20A3P Gene

Gene Families for ANKRD20A3P Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for ANKRD20A3P Gene

Suggested Antigen Peptide Sequences for ANKRD20A3P Gene

GenScript: Design optimal peptide antigens:
  • Ankyrin repeat domain-containing protein 20A3 (A20A3_HUMAN)
genes like me logo Genes that share domains with ANKRD20A3P: view

No data available for Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ANKRD20A3P Gene

Function for ANKRD20A3P Gene

Gene Ontology (GO) - Molecular Function for ANKRD20A3P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IEA --
genes like me logo Genes that share ontologies with ANKRD20A3P: view
genes like me logo Genes that share phenotypes with ANKRD20A3P: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ANKRD20A3P

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ANKRD20A3P Gene

Localization for ANKRD20A3P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ANKRD20A3P Gene

Pathways & Interactions for ANKRD20A3P Gene

PathCards logo

SuperPathways for ANKRD20A3P Gene

No Data Available

Gene Ontology (GO) - Biological Process for ANKRD20A3P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ANKRD20A3P Gene

Drugs & Compounds for ANKRD20A3P Gene

No Compound Related Data Available

Transcripts for ANKRD20A3P Gene

mRNA/cDNA for ANKRD20A3P Gene

1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
10 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ANKRD20A3P

Alternative Splicing Database (ASD) splice patterns (SP) for ANKRD20A3P Gene

No ASD Table

Relevant External Links for ANKRD20A3P Gene

GeneLoc Exon Structure for
ANKRD20A3P

Expression for ANKRD20A3P Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ANKRD20A3P

SOURCE GeneReport for Unigene cluster for ANKRD20A3P Gene:

Hs.632663
No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ANKRD20A3P Gene

Orthologs for ANKRD20A3P Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for ANKRD20A3P Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia LOC738297 30
  • 98.58 (n)
Species where no ortholog for ANKRD20A3P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for ANKRD20A3P Gene

ENSEMBL:
Gene Tree for ANKRD20A3P (if available)
TreeFam:
Gene Tree for ANKRD20A3P (if available)

Paralogs for ANKRD20A3P Gene

Pseudogenes.org Pseudogenes for ANKRD20A3P Gene

genes like me logo Genes that share paralogs with ANKRD20A3P: view

Variants for ANKRD20A3P Gene

Structural Variations from Database of Genomic Variants (DGV) for ANKRD20A3P Gene

Variant ID Type Subtype PubMed ID
dgv4326e59 CNV duplication 20981092
dgv4327e59 CNV duplication 20981092
dgv85n82 CNV duplication 23825009
esv3401603 CNV duplication 20981092
esv3419087 CNV duplication 20981092
esv3439554 CNV duplication 20981092
nsv1020579 CNV gain+loss 25217958
nsv1033842 CNV gain 25217958
nsv1075212 CNV deletion 25765185
nsv1076174 CNV deletion 25765185
nsv1076670 CNV duplication 25765185
nsv1077111 CNV deletion 25765185
nsv1115803 CNV duplication 24896259
nsv1119302 CNV duplication 24896259
nsv1122216 CNV deletion 24896259
nsv1128996 CNV duplication 24896259
nsv1132688 CNV duplication 24896259
nsv1132689 CNV duplication 24896259
nsv1145222 CNV deletion 24896259
nsv1146494 CNV duplication 26484159
nsv1151719 CNV duplication 26484159
nsv614536 CNV loss 21841781
nsv8485 CNV loss 18304495
nsv951479 CNV duplication 24416366
nsv951732 CNV deletion 24416366
nsv969544 CNV duplication 23825009
nsv969545 CNV duplication 23825009
nsv969546 CNV duplication 23825009
nsv969548 CNV duplication 23825009
nsv969549 CNV duplication 23825009
nsv969550 CNV duplication 23825009
nsv969656 CNV duplication 23825009
nsv969657 CNV duplication 23825009
nsv969658 CNV duplication 23825009
nsv969659 CNV duplication 23825009
nsv972702 CNV duplication 23825009
nsv973242 CNV duplication 23825009
nsv973244 CNV duplication 23825009
nsv973245 CNV duplication 23825009
nsv973330 CNV duplication 23825009
nsv973331 CNV duplication 23825009
nsv973332 CNV duplication 23825009
nsv973591 CNV duplication 23825009
nsv973592 CNV duplication 23825009
nsv973695 CNV duplication 23825009
nsv973699 CNV duplication 23825009
nsv982396 CNV duplication 23825009
nsv982397 CNV duplication 23825009
nsv982398 CNV duplication 23825009
nsv982400 CNV duplication 23825009
nsv982401 CNV duplication 23825009
nsv982402 CNV duplication 23825009
nsv982493 CNV duplication 23825009

Variation tolerance for ANKRD20A3P Gene

Gene Damage Index Score: 0.03; 0.58% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for ANKRD20A3P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ANKRD20A3P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Additional dbSNP identifiers (rs#s) for ANKRD20A3P Gene

Disorders for ANKRD20A3P Gene

MalaCards: The human disease database

(1) MalaCards diseases for ANKRD20A3P Gene - From: DISEASES

Disorder Aliases PubMed IDs
asbestos-related lung carcinoma
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for ANKRD20A3P

genes like me logo Genes that share disorders with ANKRD20A3P: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ANKRD20A3P Gene

Publications for ANKRD20A3P Gene

  1. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray SJ … Dunham I (Nature 2004) 3 4
  2. E3 ubiquitin ligase RNF123 targets lamin B1 and lamin-binding proteins. (PMID: 29676528) Khanna R … Parnaik VK (The FEBS journal 2018) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for ANKRD20A3P Gene

Sources for ANKRD20A3P Gene