Aliases for ANKRD20A2P Gene

Aliases for ANKRD20A2P Gene

  • Ankyrin Repeat Domain 20 Family Member A2, Pseudogene 2 3 5
  • Ankyrin Repeat Domain 20 Family Member A2 2 3
  • ANKRD20A2 3 4
  • Ankyrin Repeat Domain-Containing Protein 20A2 Pseudogene 4
  • Putative Ankyrin Repeat Domain-Containing Protein 20A2 4
  • Ankyrin Repeat Domain-Containing Protein 20A2 3
  • Ankyrin Repeat Domain 20 Family, Member A2 2
  • ANKRD20A2P 5

External Ids for ANKRD20A2P Gene

Previous HGNC Symbols for ANKRD20A2P Gene

  • ANKRD20A2

Previous GeneCards Identifiers for ANKRD20A2P Gene

  • GC09P040240

Summaries for ANKRD20A2P Gene

GeneCards Summary for ANKRD20A2P Gene

ANKRD20A2P (Ankyrin Repeat Domain 20 Family Member A2, Pseudogene) is a Pseudogene. An important paralog of this gene is ANKRD20A4P.

Additional gene information for ANKRD20A2P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ANKRD20A2P Gene

Genomics for ANKRD20A2P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ANKRD20A2P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J040222 Promoter 0.9 EPDnew Ensembl 600.7 -0.4 -384 2.2 REST CTCF NRF1 AB372696-001 ANKRD20A2P ENSG00000240240 lnc-FOXD4L6-6 piR-42891-002 BMS1P14 ENSG00000283886
GH09J040265 Enhancer 0.2 Ensembl 0.3 +41.7 41716 0.8 piR-59853-002 piR-57948-001 ANKRD20A2P ENSG00000240240 BMS1P14 ENSG00000283886
GH09J040277 Enhancer 0.2 Ensembl 0.2 +54.6 54616 1 piR-57948-001 piR-61304-001 ENSG00000240240 ANKRD20A2P BMS1P14 ENSG00000283886
GH09J040275 Enhancer 0.2 Ensembl 0.2 +52.8 52816 1.8 piR-57948-001 piR-59853-002 ENSG00000240240 ANKRD20A2P BMS1P14 ENSG00000283886
GH09J040273 Enhancer 0.2 Ensembl 0.2 +50.5 50516 0.4 piR-57948-001 piR-59853-002 ENSG00000240240 ANKRD20A2P BMS1P14 ENSG00000283886
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ANKRD20A2P on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for ANKRD20A2P

Genomic Locations for ANKRD20A2P Gene

Genomic Locations for ANKRD20A2P Gene
chr9:40,223,285-40,282,358
(GRCh38/hg38)
Size:
59,074 bases
Orientation:
Plus strand
chr9:42,368,303-42,411,410
(GRCh37/hg19)
Size:
43,108 bases
Orientation:
Plus strand

Genomic View for ANKRD20A2P Gene

Genes around ANKRD20A2P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ANKRD20A2P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ANKRD20A2P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ANKRD20A2P Gene

Proteins for ANKRD20A2P Gene

  • Protein details for ANKRD20A2P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5SQ80-A20A2_HUMAN
    Recommended name:
    Putative ankyrin repeat domain-containing protein 20A2
    Protein Accession:
    Q5SQ80

    Protein attributes for ANKRD20A2P Gene

    Size:
    823 amino acids
    Molecular mass:
    94087 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ANKRD20A2P Gene

Post-translational modifications for ANKRD20A2P Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ANKRD20A2P Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for ANKRD20A2P Gene

Domains & Families for ANKRD20A2P Gene

Gene Families for ANKRD20A2P Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for ANKRD20A2P Gene

Suggested Antigen Peptide Sequences for ANKRD20A2P Gene

GenScript: Design optimal peptide antigens:
  • Ankyrin repeat domain-containing protein 20A2 (A20A2_HUMAN)
  • ANKRD20A2 protein (B2RTT7_HUMAN)
genes like me logo Genes that share domains with ANKRD20A2P: view

No data available for Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ANKRD20A2P Gene

Function for ANKRD20A2P Gene

Gene Ontology (GO) - Molecular Function for ANKRD20A2P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IEA --
genes like me logo Genes that share ontologies with ANKRD20A2P: view
genes like me logo Genes that share phenotypes with ANKRD20A2P: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ANKRD20A2P

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ANKRD20A2P Gene

Localization for ANKRD20A2P Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ANKRD20A2P gene
Compartment Confidence
nucleus 2
cytosol 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ANKRD20A2P Gene

Pathways & Interactions for ANKRD20A2P Gene

PathCards logo

SuperPathways for ANKRD20A2P Gene

No Data Available

Gene Ontology (GO) - Biological Process for ANKRD20A2P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ANKRD20A2P Gene

Drugs & Compounds for ANKRD20A2P Gene

No Compound Related Data Available

Transcripts for ANKRD20A2P Gene

mRNA/cDNA for ANKRD20A2P Gene

1 REFSEQ mRNAs :
4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ANKRD20A2P

Alternative Splicing Database (ASD) splice patterns (SP) for ANKRD20A2P Gene

No ASD Table

Relevant External Links for ANKRD20A2P Gene

GeneLoc Exon Structure for
ANKRD20A2P

Expression for ANKRD20A2P Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ANKRD20A2P

No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ANKRD20A2P Gene

Orthologs for ANKRD20A2P Gene

This gene was present in the common ancestor of chordates.

Orthologs for ANKRD20A2P Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia LOC738297 30
  • 98.62 (n)
-- 31
  • 97 (a)
OneToMany
Dog
(Canis familiaris)
Mammalia -- 31
  • 43 (a)
ManyToMany
-- 31
  • 42 (a)
ManyToMany
-- 31
  • 40 (a)
ManyToMany
-- 31
  • 29 (a)
ManyToMany
-- 31
  • 16 (a)
ManyToMany
-- 31
  • 16 (a)
ManyToMany
-- 31
  • 15 (a)
ManyToMany
-- 31
  • 14 (a)
ManyToMany
Mouse
(Mus musculus)
Mammalia Gm1758 31
  • 36 (a)
ManyToMany
Cow
(Bos Taurus)
Mammalia -- 31
  • 34 (a)
OneToMany
Platypus
(Ornithorhynchus anatinus)
Mammalia -- 31
  • 11 (a)
OneToMany
Chicken
(Gallus gallus)
Aves -- 31
  • 18 (a)
OneToMany
Lizard
(Anolis carolinensis)
Reptilia -- 31
  • 41 (a)
ManyToMany
Zebrafish
(Danio rerio)
Actinopterygii ANKRD7 31
  • 9 (a)
OneToMany
Species where no ortholog for ANKRD20A2P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for ANKRD20A2P Gene

ENSEMBL:
Gene Tree for ANKRD20A2P (if available)
TreeFam:
Gene Tree for ANKRD20A2P (if available)

Paralogs for ANKRD20A2P Gene

Variants for ANKRD20A2P Gene

Structural Variations from Database of Genomic Variants (DGV) for ANKRD20A2P Gene

Variant ID Type Subtype PubMed ID
dgv4326e59 CNV duplication 20981092
dgv4327e59 CNV duplication 20981092
dgv85n82 CNV duplication 23825009
esv3401603 CNV duplication 20981092
esv3419087 CNV duplication 20981092
esv3439554 CNV duplication 20981092
nsv1020579 CNV gain+loss 25217958
nsv1033842 CNV gain 25217958
nsv1075212 CNV deletion 25765185
nsv1077111 CNV deletion 25765185
nsv1115803 CNV duplication 24896259
nsv1122216 CNV deletion 24896259
nsv1128996 CNV duplication 24896259
nsv1132688 CNV duplication 24896259
nsv1132689 CNV duplication 24896259
nsv1145222 CNV deletion 24896259
nsv1146494 CNV duplication 26484159
nsv8485 CNV loss 18304495
nsv951732 CNV deletion 24416366
nsv969544 CNV duplication 23825009
nsv969545 CNV duplication 23825009
nsv969546 CNV duplication 23825009
nsv969548 CNV duplication 23825009
nsv969549 CNV duplication 23825009
nsv969550 CNV duplication 23825009
nsv972702 CNV duplication 23825009
nsv973242 CNV duplication 23825009
nsv973244 CNV duplication 23825009
nsv973245 CNV duplication 23825009
nsv973591 CNV duplication 23825009
nsv973592 CNV duplication 23825009
nsv982396 CNV duplication 23825009
nsv982397 CNV duplication 23825009
nsv982398 CNV duplication 23825009
nsv982400 CNV duplication 23825009
nsv982401 CNV duplication 23825009
nsv982402 CNV duplication 23825009

Variation tolerance for ANKRD20A2P Gene

Gene Damage Index Score: 3.27; 52.95% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for ANKRD20A2P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ANKRD20A2P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Additional dbSNP identifiers (rs#s) for ANKRD20A2P Gene

Disorders for ANKRD20A2P Gene

No disorders were found for ANKRD20A2P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ANKRD20A2P Gene

Publications for ANKRD20A2P Gene

  1. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray SJ … Dunham I (Nature 2004) 3 4
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for ANKRD20A2P Gene

Sources for ANKRD20A2P Gene