Aliases for ANKRD20A11P Gene

Aliases for ANKRD20A11P Gene

  • Ankyrin Repeat Domain 20 Family Member A11, Pseudogene 2 3 5
  • Ankyrin Repeat Domain 20 Family, Member A11, Pseudogene 2
  • Ankyrin Repeat Domain 20 Family, Member A3 Pseudogene 3
  • Chromosome 21 Open Reading Frame 81 2
  • C21orf81 3

External Ids for ANKRD20A11P Gene

Previous HGNC Symbols for ANKRD20A11P Gene

  • C21orf81

Previous GeneCards Identifiers for ANKRD20A11P Gene

  • GC21U900439
  • GC21M015284
  • GC21M015288

Summaries for ANKRD20A11P Gene

GeneCards Summary for ANKRD20A11P Gene

ANKRD20A11P (Ankyrin Repeat Domain 20 Family Member A11, Pseudogene) is a Pseudogene.

Additional gene information for ANKRD20A11P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ANKRD20A11P Gene

Genomics for ANKRD20A11P Gene

GeneHancer (GH) Regulatory Elements for ANKRD20A11P Gene

Promoters and enhancers for ANKRD20A11P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J013979 Promoter/Enhancer 1.1 Ensembl ENCODE 520.1 +0.7 744 2.6 CTCF REST CTBP1 TRIM22 TAF9B NFIC GABPA POLR2G KLF13 GABPB1 ANKRD20A11P lnc-LIPI-4 CYP4F29P RBM11 piR-59269
GH21J014064 Promoter 0.8 Ensembl 8 -83.9 -83857 1.8 ZFX HCFC1 SIN3A MYC ELK1 CTCF ELF1 SNIP1 MAZ BHLHE40 ANKRD20A18P lnc-RBM11-6-001 lnc-RBM11-6-002 ANKRD20A11P RHOT1P2 ENSG00000224905 RNA5SP488 RF00001-200
GH21J014280 Enhancer 0.3 ENCODE 4.9 -300.8 -300847 0.7 ZNF592 piR-46662-412 ABCC13 RBM11 ANKRD20A11P lnc-RBM11-5
GH21J014040 Enhancer 0.2 Ensembl 6 -59.8 -59757 0.4 ANKRD20A11P LOC105377134 ENSG00000224905 lnc-RBM11-6-001
GH21J013969 Enhancer 0.5 Ensembl 0.4 +11.2 11243 0.8 NCOR1 NR2F1 TAL1 TCF12 CBFA2T2 CBFA2T3 RF00026-655 RNU6-954P piR-53377-002 ANKRD20A11P lnc-LIPI-4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ANKRD20A11P on UCSC Golden Path with GeneCards custom track

Genomic Locations for ANKRD20A11P Gene

Genomic Locations for ANKRD20A11P Gene
chr21:13,909,574-13,980,444
(GRCh38/hg38)
Size:
70,871 bases
Orientation:
Minus strand
chr21:15,281,895-15,352,765
(GRCh37/hg19)
Size:
70,871 bases
Orientation:
Minus strand

Genomic View for ANKRD20A11P Gene

Genes around ANKRD20A11P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ANKRD20A11P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ANKRD20A11P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ANKRD20A11P Gene

Proteins for ANKRD20A11P Gene

Post-translational modifications for ANKRD20A11P Gene

No Post-translational modifications

No data available for DME Specific Peptides for ANKRD20A11P Gene

Domains & Families for ANKRD20A11P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ANKRD20A11P Gene

Function for ANKRD20A11P Gene

Phenotypes From GWAS Catalog for ANKRD20A11P Gene

miRNA for ANKRD20A11P Gene

miRTarBase miRNAs that target ANKRD20A11P

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ANKRD20A11P Gene

Localization for ANKRD20A11P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ANKRD20A11P Gene

Pathways & Interactions for ANKRD20A11P Gene

PathCards logo

SuperPathways for ANKRD20A11P Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ANKRD20A11P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ANKRD20A11P Gene

Drugs & Compounds for ANKRD20A11P Gene

No Compound Related Data Available

Transcripts for ANKRD20A11P Gene

mRNA/cDNA for ANKRD20A11P Gene

1 REFSEQ mRNAs :
4 NCBI additional mRNA sequence :
6 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ANKRD20A11P Gene

No ASD Table

Relevant External Links for ANKRD20A11P Gene

GeneLoc Exon Structure for
ANKRD20A11P

Expression for ANKRD20A11P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ANKRD20A11P Gene

mRNA differential expression in normal tissues according to GTEx for ANKRD20A11P Gene

This gene is overexpressed in Esophagus - Mucosa (x15.4) and Testis (x4.1).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ANKRD20A11P

SOURCE GeneReport for Unigene cluster for ANKRD20A11P Gene:

Hs.364456
genes like me logo Genes that share expression patterns with ANKRD20A11P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ANKRD20A11P Gene

Orthologs for ANKRD20A11P Gene

Evolution for ANKRD20A11P Gene

ENSEMBL:
Gene Tree for ANKRD20A11P (if available)
TreeFam:
Gene Tree for ANKRD20A11P (if available)

No data available for Orthologs for ANKRD20A11P Gene

Paralogs for ANKRD20A11P Gene

No data available for Paralogs for ANKRD20A11P Gene

Variants for ANKRD20A11P Gene

Structural Variations from Database of Genomic Variants (DGV) for ANKRD20A11P Gene

Variant ID Type Subtype PubMed ID
dgv4378n100 CNV gain 25217958
dgv4385n100 CNV gain 25217958
dgv7751n54 CNV gain 21841781
dgv7757n54 CNV gain 21841781
dgv93e203 CNV gain+loss 21179565
esv1005089 OTHER inversion 20482838
esv25073 CNV gain 19812545
esv2508507 CNV loss 19546169
esv2723170 CNV deletion 23290073
esv2723171 CNV deletion 23290073
esv2751923 CNV loss 17911159
esv2758809 CNV gain+loss 17122850
esv3434603 CNV duplication 20981092
esv3557457 CNV deletion 23714750
esv3568104 CNV loss 25503493
esv3646414 CNV gain 21293372
esv3893363 CNV gain 25118596
esv3893369 CNV loss 25118596
nsv1058202 CNV loss 25217958
nsv1059465 CNV gain 25217958
nsv1062730 CNV loss 25217958
nsv1131620 CNV deletion 24896259
nsv953339 CNV duplication 24416366
nsv962692 CNV duplication 23825009
nsv962693 CNV duplication 23825009
nsv962694 CNV duplication 23825009
nsv962695 CNV duplication 23825009
nsv964516 CNV duplication 23825009
nsv965971 CNV duplication 23825009
nsv966000 CNV duplication 23825009
nsv966001 CNV duplication 23825009
nsv966002 CNV duplication 23825009
nsv979556 CNV duplication 23825009
nsv979557 CNV duplication 23825009
nsv979558 CNV duplication 23825009
nsv9853 CNV gain 18304495

Additional Variant Information for ANKRD20A11P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ANKRD20A11P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for ANKRD20A11P Gene

Disorders for ANKRD20A11P Gene

Additional Disease Information for ANKRD20A11P

No disorders were found for ANKRD20A11P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ANKRD20A11P Gene

Publications for ANKRD20A11P Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54
  2. Nineteen additional unpredicted transcripts from human chromosome 21. (PMID: 12036297) Reymond A … Antonarakis SE (Genomics 2002) 3 54

Products for ANKRD20A11P Gene

Sources for ANKRD20A11P Gene