Aliases for ANKRD18DP Gene

Aliases for ANKRD18DP Gene

  • Ankyrin Repeat Domain 18D, Pseudogene 2 3 5
  • Ankyrin Repeat Domain 18A Pseudogene 3

External Ids for ANKRD18DP Gene

Previous GeneCards Identifiers for ANKRD18DP Gene

  • GC03M197781

Summaries for ANKRD18DP Gene

GeneCards Summary for ANKRD18DP Gene

ANKRD18DP (Ankyrin Repeat Domain 18D, Pseudogene) is a Pseudogene.

Additional gene information for ANKRD18DP Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ANKRD18DP Gene

Genomics for ANKRD18DP Gene

GeneHancer (GH) Regulatory Elements for ANKRD18DP Gene

Promoters and enhancers for ANKRD18DP Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J198080 Promoter/Enhancer 1.6 Ensembl ENCODE CraniofacialAtlas 759.2 -0.1 -81 2.4 CTCF ZBTB6 CC2D1A ELF1 L3MBTL2 ZFX MYC SMARCA4 EGR1 GMEB1 ANKRD18DP lnc-IQCG-11 piR-60814 ENSG00000234742 ENSG00000214135 LRCH3 LMLN-AS1 FRG2FP
GH03J198071 Enhancer 0.9 Ensembl ENCODE 6.4 +8.9 8879 1.7 SMARCE1 TCF7L2 ZNF362 SP7 SMARCA4 PRDM1 FOSL2 DPF2 CREB1 CTBP1 RF00026-768 RNU6-821P ANKRD18DP lnc-IQCG-11 piR-30030
GH03J198107 Enhancer 0.7 Ensembl 7.2 -27.5 -27513 1.8 SMARCE1 TEAD4 GTF2F1 CBFA2T2 IKZF1 DPF2 ETV6 EP300 TCF12 GABPA FRG2FP lnc-LMLN-2 ANKRD18DP LMLN-AS1 IQCG
GH03J198066 Enhancer 0.8 Ensembl ENCODE 0.4 +13.9 13924 1.2 ZBTB40 IKZF1 BACH1 TRIM22 IKZF2 DPF2 BCL11A RUNX3 BMI1 NR2F1 LMLN-AS1 RF00026-768 RNU6-821P piR-37815 ANKRD18DP lnc-IQCG-11
GH03J198067 Enhancer 0.2 Ensembl 0.4 +13.0 13019 0.2 IQCG RPL35A RF00026-768 RNU6-821P piR-37815 ANKRD18DP lnc-IQCG-11
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ANKRD18DP on UCSC Golden Path with GeneCards custom track

Genomic Locations for ANKRD18DP Gene

Genomic Locations for ANKRD18DP Gene
chr3:198,053,522-198,080,720
(GRCh38/hg38)
Size:
27,199 bases
Orientation:
Minus strand
chr3:197,780,393-197,807,591
(GRCh37/hg19)
Size:
27,199 bases
Orientation:
Minus strand

Genomic View for ANKRD18DP Gene

Genes around ANKRD18DP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ANKRD18DP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ANKRD18DP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ANKRD18DP Gene

Proteins for ANKRD18DP Gene

Post-translational modifications for ANKRD18DP Gene

No Post-translational modifications

No data available for DME Specific Peptides for ANKRD18DP Gene

Domains & Families for ANKRD18DP Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ANKRD18DP Gene

Function for ANKRD18DP Gene

genes like me logo Genes that share phenotypes with ANKRD18DP: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ANKRD18DP

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ANKRD18DP Gene

Localization for ANKRD18DP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ANKRD18DP Gene

Pathways & Interactions for ANKRD18DP Gene

PathCards logo

SuperPathways for ANKRD18DP Gene

No Data Available

Gene Ontology (GO) - Biological Process for ANKRD18DP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ANKRD18DP Gene

Drugs & Compounds for ANKRD18DP Gene

No Compound Related Data Available

Transcripts for ANKRD18DP Gene

mRNA/cDNA for ANKRD18DP Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(16) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for ANKRD18DP

Alternative Splicing Database (ASD) splice patterns (SP) for ANKRD18DP Gene

No ASD Table

Relevant External Links for ANKRD18DP Gene

GeneLoc Exon Structure for
ANKRD18DP
ECgene alternative splicing isoforms for
ANKRD18DP

Expression for ANKRD18DP Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ANKRD18DP Gene

mRNA differential expression in normal tissues according to GTEx for ANKRD18DP Gene

This gene is overexpressed in Testis (x15.6), Brain - Anterior cingulate cortex (BA24) (x5.9), and Brain - Nucleus accumbens (basal ganglia) (x4.5).

NURSA nuclear receptor signaling pathways regulating expression of ANKRD18DP Gene:

ANKRD18DP

SOURCE GeneReport for Unigene cluster for ANKRD18DP Gene:

Hs.512227
genes like me logo Genes that share expression patterns with ANKRD18DP: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ANKRD18DP Gene

Orthologs for ANKRD18DP Gene

Evolution for ANKRD18DP Gene

ENSEMBL:
Gene Tree for ANKRD18DP (if available)
TreeFam:
Gene Tree for ANKRD18DP (if available)

No data available for Orthologs for ANKRD18DP Gene

Paralogs for ANKRD18DP Gene

No data available for Paralogs for ANKRD18DP Gene

Variants for ANKRD18DP Gene

Sequence variations from dbSNP and Humsavar for ANKRD18DP Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000239184 -- 198,074,905(-) T/C/G intron_variant
rs1000314578 -- 198,075,318(-) T/C intron_variant
rs1000784034 -- 198,081,600(-) T/G upstream_transcript_variant
rs1000917117 -- 198,063,226(-) T/C intron_variant
rs1000978709 -- 198,062,299(-) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for ANKRD18DP Gene

Variant ID Type Subtype PubMed ID
dgv5045n100 CNV gain 25217958
dgv5046n100 CNV gain 25217958
dgv5047n100 CNV gain 25217958
dgv5048n100 CNV gain 25217958
dgv8865n54 CNV gain 21841781
dgv8866n54 CNV gain 21841781
dgv8869n54 CNV gain 21841781
esv2751989 CNV gain 17911159
esv2759215 CNV gain 17122850
esv2763718 CNV gain+loss 21179565
esv33797 CNV gain+loss 17666407
esv3575649 CNV gain 25503493
esv3599334 CNV gain 21293372
esv3599335 CNV loss 21293372
esv3599337 CNV loss 21293372
esv3893855 CNV gain 25118596
esv3893858 CNV gain 25118596
nsv1012702 CNV gain 25217958
nsv1110772 CNV insertion 24896259
nsv1120468 CNV tandem duplication 24896259
nsv471160 CNV gain 18288195
nsv527527 CNV gain 19592680
nsv593165 CNV gain 21841781
nsv979916 CNV duplication 23825009
nsv997702 CNV gain 25217958

Additional Variant Information for ANKRD18DP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ANKRD18DP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ANKRD18DP Gene

Disorders for ANKRD18DP Gene

Additional Disease Information for ANKRD18DP

No disorders were found for ANKRD18DP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ANKRD18DP Gene

Publications for ANKRD18DP Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

Products for ANKRD18DP Gene

Sources for ANKRD18DP Gene