Aliases for ANKRD10-IT1 Gene

Subcategory (RNA class) for ANKRD10-IT1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ANKRD10-IT1 Gene

  • ANKRD10 Intronic Transcript 1 2 3 5
  • ANKRD10-IT1 2 5 165
  • ANKRD10 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • NONHSAG014189.2 91
  • HSALNG0099405 164

External Ids for ANKRD10-IT1 Gene

Previous GeneCards Identifiers for ANKRD10-IT1 Gene

  • GC13M111548

Summaries for ANKRD10-IT1 Gene

GeneCards Summary for ANKRD10-IT1 Gene

ANKRD10-IT1 (ANKRD10 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ANKRD10-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ANKRD10-IT1 Gene

Genomics for ANKRD10-IT1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ANKRD10-IT1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ANKRD10-IT1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ANKRD10-IT1 Gene

Genomic Locations for ANKRD10-IT1 Gene
chr13:110,894,639-110,899,173
(GRCh38/hg38)
Size:
4,535 bases
Orientation:
Minus strand
chr13:111,547,406-111,553,567
(GRCh37/hg19)
Size:
6,162 bases
Orientation:
Minus strand

Genomic View for ANKRD10-IT1 Gene

Genes around ANKRD10-IT1 on UCSC Golden Path with GeneCards custom track
ANKRD10-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ANKRD10-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ANKRD10-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ANKRD10-IT1 Gene

Proteins for ANKRD10-IT1 Gene

Post-translational modifications for ANKRD10-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ANKRD10-IT1 Gene

Domains & Families for ANKRD10-IT1 Gene

Gene Families for ANKRD10-IT1 Gene

genes like me logo Genes that share domains with ANKRD10-IT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ANKRD10-IT1 Gene

Function for ANKRD10-IT1 Gene

Phenotypes From GWAS Catalog for ANKRD10-IT1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ANKRD10-IT1 Gene

Localization for ANKRD10-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ANKRD10-IT1 Gene

Pathways & Interactions for ANKRD10-IT1 Gene

PathCards logo

SuperPathways for ANKRD10-IT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ANKRD10-IT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ANKRD10-IT1 Gene

Drugs & Compounds for ANKRD10-IT1 Gene

No Compound Related Data Available

Transcripts for ANKRD10-IT1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ANKRD10-IT1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000764FAC_9606 lncRNA 800 3

HGNC: 39891,

Ensembl: ENST00000426991 (view in UCSC) ,

LNCipedia: ANKRD10-IT1:2,

URS00000A2428_9606 lncRNA 380 3

LncBook: HSALNT0206959,

LNCipedia: ANKRD10-IT1:1,

NONCODE: NONHSAT035188.2,

URS00009BC55C_9606 lncRNA 380 2

LncBook: HSALNT0206958,

NONCODE: NONHSAT167270.1,

ANKRD10-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ANKRD10-IT1 Gene

2 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for ANKRD10-IT1 Gene

No ASD Table

Relevant External Links for ANKRD10-IT1 Gene

GeneLoc Exon Structure for
ANKRD10-IT1

Expression for ANKRD10-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ANKRD10-IT1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ANKRD10-IT1

SOURCE GeneReport for Unigene cluster for ANKRD10-IT1 Gene:

Hs.655994
genes like me logo Genes that share expression patterns with ANKRD10-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ANKRD10-IT1 Gene

Orthologs for ANKRD10-IT1 Gene

Evolution for ANKRD10-IT1 Gene

ENSEMBL:
Gene Tree for ANKRD10-IT1 (if available)
TreeFam:
Gene Tree for ANKRD10-IT1 (if available)

No data available for Orthologs for ANKRD10-IT1 Gene

Paralogs for ANKRD10-IT1 Gene

No data available for Paralogs for ANKRD10-IT1 Gene

Variants for ANKRD10-IT1 Gene

Additional Variant Information for ANKRD10-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ANKRD10-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ANKRD10-IT1 Gene

Disorders for ANKRD10-IT1 Gene

No disorders were found for ANKRD10-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ANKRD10-IT1 Gene

Publications for ANKRD10-IT1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for ANKRD10-IT1 Gene

Sources for ANKRD10-IT1 Gene