Aliases for ANK3-DT Gene

Subcategory (RNA class) for ANK3-DT Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ANK3-DT Gene

  • ANK3 Divergent Transcript 2 3 5
  • ANK3-DT 2 5
  • NONHSAG005986.2 91
  • HSALNG0078255 164
  • Lnc-CDK1-1 165

External Ids for ANK3-DT Gene

Summaries for ANK3-DT Gene

GeneCards Summary for ANK3-DT Gene

ANK3-DT (ANK3 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ANK3-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ANK3-DT Gene

Genomics for ANK3-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ANK3-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J060731 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 610.5 -1.0 -950 3.6 CTCF PRDM10 PRDM1 EZH2 ZNF600 ZFX ZNF561 ZBTB20 SMARCA5 RUNX3 ANK3 ANK3-DT lnc-RHOBTB1-2 CDK1 piR-43106-025 CCDC6
GH10J060734 Enhancer 0.7 Ensembl ENCODE dbSUPER 610.5 +2.0 1950 1.4 ZNF600 YY1 ZNF664 ANK3-DT ANK3 CDK1
GH10J060703 Enhancer 0.9 Ensembl ENCODE 20.8 -29.0 -28969 1.6 GATAD2A RXRB CEBPA SOX13 SP1 ZEB1 TSHZ1 CEBPB FOXA2 OSR2 ANK3-DT ANK3 piR-43106-025 lnc-RHOBTB1-2 lnc-CDK1-6 CCDC6
GH10J060661 Enhancer 0.9 Ensembl ENCODE 20 -68.8 -68776 6.9 JUND MTA2 POLR2A DPF2 EP300 HMBOX1 EGR1 CTBP1 NFE2 HDAC2 ANK3-DT ANK3 lnc-CDK1-6 piR-42613-010 lnc-RHOBTB1-2 CCDC6
GH10J060762 Enhancer 0.6 Ensembl ENCODE 18.7 +29.4 29449 1.2 KDM1A ZNF416 NANOG SP1 POU5F1 ANK3-DT ANK3 CDK1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ANK3-DT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ANK3-DT Gene

Genomic Locations for ANK3-DT Gene
chr10:60,733,551-60,746,148
(GRCh38/hg38)
Size:
12,598 bases
Orientation:
Plus strand
chr10:62,494,100-62,501,586
(GRCh37/hg19)
Size:
7,487 bases
Orientation:
Plus strand

Genomic View for ANK3-DT Gene

Genes around ANK3-DT on UCSC Golden Path with GeneCards custom track
ANK3-DT in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ANK3-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ANK3-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ANK3-DT Gene

Proteins for ANK3-DT Gene

Post-translational modifications for ANK3-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for ANK3-DT Gene

Domains & Families for ANK3-DT Gene

Gene Families for ANK3-DT Gene

genes like me logo Genes that share domains with ANK3-DT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ANK3-DT Gene

Function for ANK3-DT Gene

Phenotypes From GWAS Catalog for ANK3-DT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ANK3-DT Gene

Localization for ANK3-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ANK3-DT Gene

Pathways & Interactions for ANK3-DT Gene

PathCards logo

SuperPathways for ANK3-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for ANK3-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ANK3-DT Gene

Drugs & Compounds for ANK3-DT Gene

No Compound Related Data Available

Transcripts for ANK3-DT Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ANK3-DT Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000000475B_9606 lncRNA 434 5

HGNC: 54102,

Ensembl: ENST00000517854 (view in UCSC) ,

LncBook: HSALNT0163268,

LNCipedia: lnc-CDK1-1:1,

NONCODE: NONHSAT013547.2,

URS00008B9CCE_9606 lncRNA 434 3

LncBook: HSALNT0163267,

LNCipedia: lnc-CDK1-1:2,

NONCODE: NONHSAT155543.1,

URS00009ACF31_9606 lncRNA 434 2

LncBook: HSALNT0163269,

NONCODE: NONHSAT155544.1,

ANK3-DT in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for ANK3-DT Gene

No ASD Table

Relevant External Links for ANK3-DT Gene

GeneLoc Exon Structure for
ANK3-DT

No data available for mRNA/cDNA for ANK3-DT Gene

Expression for ANK3-DT Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ANK3-DT Gene

Orthologs for ANK3-DT Gene

Evolution for ANK3-DT Gene

ENSEMBL:
Gene Tree for ANK3-DT (if available)
TreeFam:
Gene Tree for ANK3-DT (if available)

No data available for Orthologs for ANK3-DT Gene

Paralogs for ANK3-DT Gene

No data available for Paralogs for ANK3-DT Gene

Variants for ANK3-DT Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for ANK3-DT Gene

SNP ID Clinical significance and condition Chr 10 pos Variation AA Info Type
rs112339619 Uncertain Significance: Autistic disorder of childhood onset 60,734,058(+) G/A

Additional dbSNP identifiers (rs#s) for ANK3-DT Gene

Additional Variant Information for ANK3-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ANK3-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ANK3-DT Gene

Disorders for ANK3-DT Gene

Additional Disease Information for ANK3-DT

No disorders were found for ANK3-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ANK3-DT Gene

Publications for ANK3-DT Gene

No publications were found for ANK3-DT Gene.

No data available for Mastermind for ANK3-DT Gene

Products for ANK3-DT Gene

Sources for ANK3-DT Gene