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Aliases for AMZ2P1 Gene

Aliases for AMZ2P1 Gene

  • Archaelysin Family Metallopeptidase 2 Pseudogene 1 2 3 5

External Ids for AMZ2P1 Gene

Previous GeneCards Identifiers for AMZ2P1 Gene

  • GC17M062963
  • GC17M058355

Summaries for AMZ2P1 Gene

GeneCards Summary for AMZ2P1 Gene

AMZ2P1 (Archaelysin Family Metallopeptidase 2 Pseudogene 1) is a Pseudogene.

Additional gene information for AMZ2P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for AMZ2P1 Gene

Genomics for AMZ2P1 Gene

GeneHancer (GH) Regulatory Elements for AMZ2P1 Gene

Promoters and enhancers for AMZ2P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I064973 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 592.6 +0.3 338 3.1 HDGF PKNOX1 CLOCK FOXA2 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 AMZ2P1 POLG2 SLC16A6P1 GNA13 CEP95 GC17M064881
GH17I064983 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 42.9 -9.8 -9787 4.5 HDGF PKNOX1 ATF1 FOXA2 SMAD1 NEUROD1 ZBTB7B IRF4 ZNF207 ZNF143 GC17P064985 AMZ2P1 GNA13 DDX5 CEP95 RGS9 LRRC37A3 GC17M064881
GH17I064988 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 42.7 -13.4 -13422 2 SUZ12 ZIC2 ZNF121 ZNF335 FOSL1 SCRT2 ATF7 FOS ZNF444 FOSL2 AMZ2P1 GNA13 DDX5 CEP95 GC17P064985 ENSG00000266598 GC17M064881
GH17I065054 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 17.3 -81.1 -81130 5.4 HDGF PKNOX1 CLOCK ARID4B NEUROD1 SIN3A ZNF2 ZBTB7B YY1 POLR2B GNA13 AMZ2P1 DDX5 PLEKHM1P1 POLG2 ENSG00000281311 CEP95 ENSG00000265982 SLC16A6P1 ERN1
GH17I065061 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 27 -88.0 -88027 3.7 FOXA2 ARID4B SIN3A DMAP1 ZNF766 GATA2 KLF7 FOS ATF7 CAVIN1 GC17P065064 AMZ2P1 RGS9 GNA13 GC17M064881
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around AMZ2P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for AMZ2P1 Gene

Genomic Locations for AMZ2P1 Gene
chr17:64,966,550-64,975,585
(GRCh38/hg38)
Size:
9,036 bases
Orientation:
Minus strand
chr17:62,962,668-62,971,703
(GRCh37/hg19)

Genomic View for AMZ2P1 Gene

Genes around AMZ2P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
AMZ2P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AMZ2P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for AMZ2P1 Gene

Proteins for AMZ2P1 Gene

Post-translational modifications for AMZ2P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AMZ2P1 Gene

Domains & Families for AMZ2P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for AMZ2P1 Gene

Function for AMZ2P1 Gene

Phenotypes From GWAS Catalog for AMZ2P1 Gene

Phenotypes for AMZ2P1 Gene

genes like me logo Genes that share phenotypes with AMZ2P1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AMZ2P1 Gene

Localization for AMZ2P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AMZ2P1 Gene

Pathways & Interactions for AMZ2P1 Gene

SuperPathways for AMZ2P1 Gene

No Data Available

Interacting Proteins for AMZ2P1 Gene

Gene Ontology (GO) - Biological Process for AMZ2P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for AMZ2P1 Gene

Drugs & Compounds for AMZ2P1 Gene

No Compound Related Data Available

Transcripts for AMZ2P1 Gene

mRNA/cDNA for AMZ2P1 Gene

Unigene Clusters for AMZ2P1 Gene

Archaelysin family metallopeptidase 2 pseudogene 1:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for AMZ2P1 Gene

No ASD Table

Relevant External Links for AMZ2P1 Gene

GeneLoc Exon Structure for
AMZ2P1
ECgene alternative splicing isoforms for
AMZ2P1

Expression for AMZ2P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for AMZ2P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of AMZ2P1 Gene:

AMZ2P1

SOURCE GeneReport for Unigene cluster for AMZ2P1 Gene:

Hs.396447
genes like me logo Genes that share expression patterns with AMZ2P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AMZ2P1 Gene

Orthologs for AMZ2P1 Gene

Evolution for AMZ2P1 Gene

ENSEMBL:
Gene Tree for AMZ2P1 (if available)
TreeFam:
Gene Tree for AMZ2P1 (if available)

No data available for Orthologs for AMZ2P1 Gene

Paralogs for AMZ2P1 Gene

No data available for Paralogs for AMZ2P1 Gene

Variants for AMZ2P1 Gene

Sequence variations from dbSNP and Humsavar for AMZ2P1 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000354728 -- 64,971,303(-) T/C intron_variant
rs1000501208 -- 64,967,041(-) A/G non_coding_transcript_variant
rs1000964855 -- 64,972,850(-) G/A non_coding_transcript_variant
rs1001102889 -- 64,973,210(-) C/T intron_variant
rs1001501365 -- 64,968,454(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for AMZ2P1 Gene

Variant ID Type Subtype PubMed ID
dgv3274n100 CNV gain 25217958
dgv45n68 CNV loss 17160897
nsv1066765 CNV gain 25217958
nsv1120054 OTHER inversion 24896259
nsv960522 CNV duplication 23825009

Additional Variant Information for AMZ2P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AMZ2P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for AMZ2P1 Gene

Disorders for AMZ2P1 Gene

Additional Disease Information for AMZ2P1

No disorders were found for AMZ2P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AMZ2P1 Gene

Publications for AMZ2P1 Gene

  1. Charting the landscape of tandem BRCT domain-mediated protein interactions. (PMID: 22990118) Woods NT … Monteiro AN (Science signaling 2012) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for AMZ2P1 Gene

Sources for AMZ2P1 Gene

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