Aliases for AMMECR1-IT1 Gene

Subcategory (RNA class) for AMMECR1-IT1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for AMMECR1-IT1 Gene

  • AMMECR1 Intronic Transcript 1 2 3 5
  • AMMECR1-IT1 2 5 165
  • AMMECR1 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • NONHSAG055101.2 91
  • HSALNG0139518 164

External Ids for AMMECR1-IT1 Gene

Previous GeneCards Identifiers for AMMECR1-IT1 Gene

  • GC00U933059
  • GC0XM109549

Summaries for AMMECR1-IT1 Gene

GeneCards Summary for AMMECR1-IT1 Gene

AMMECR1-IT1 (AMMECR1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for AMMECR1-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for AMMECR1-IT1 Gene

Genomics for AMMECR1-IT1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for AMMECR1-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ110308 Enhancer 0.2 Ensembl 600.7 -1.3 -1278 0.6 AMMECR1-IT1 lnc-CHRDL1-2 RTL9 LOC101928589 AMMECR1
GH0XJ110315 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas 0.4 -10.0 -9989 4.8 RNF2 PRDM10 ZNF512 IKZF1 POLR2A PRDM1 RBFOX2 PATZ1 IKZF2 BRD9 LOC105373312 lnc-CHRDL1-2 lnc-RTL9-6 AMMECR1 RTL9 AMMECR1-IT1 LOC101928589
GH0XJ110295 Enhancer 0.4 Ensembl 0.4 +13.0 13021 0.8 JUND NFE2 EMSY piR-55705-063 AMMECR1-IT1 lnc-CHRDL1-2 RTL9 LOC101928589 AMMECR1
GH0XJ110293 Enhancer 0.2 Ensembl 0.4 +13.9 13921 0.2 piR-55705-063 AMMECR1-IT1 lnc-CHRDL1-2 RTL9 LOC101928589 AMMECR1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around AMMECR1-IT1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for AMMECR1-IT1 Gene

Genomic Locations for AMMECR1-IT1 Gene
chrX:110,305,420-110,307,222
(GRCh38/hg38)
Size:
1,803 bases
Orientation:
Minus strand
chrX:109,548,648-109,550,449
(GRCh37/hg19)
Size:
1,802 bases
Orientation:
Minus strand

Genomic View for AMMECR1-IT1 Gene

Genes around AMMECR1-IT1 on UCSC Golden Path with GeneCards custom track
AMMECR1-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
AMMECR1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for AMMECR1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for AMMECR1-IT1 Gene

Proteins for AMMECR1-IT1 Gene

Post-translational modifications for AMMECR1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for AMMECR1-IT1 Gene

Domains & Families for AMMECR1-IT1 Gene

Gene Families for AMMECR1-IT1 Gene

genes like me logo Genes that share domains with AMMECR1-IT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for AMMECR1-IT1 Gene

Function for AMMECR1-IT1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for AMMECR1-IT1 Gene

Localization for AMMECR1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for AMMECR1-IT1 Gene

Pathways & Interactions for AMMECR1-IT1 Gene

PathCards logo

SuperPathways for AMMECR1-IT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for AMMECR1-IT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for AMMECR1-IT1 Gene

Drugs & Compounds for AMMECR1-IT1 Gene

No Compound Related Data Available

Transcripts for AMMECR1-IT1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for AMMECR1-IT1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005FEBAC_9606 lncRNA 561 5

HGNC: 41306,

Ensembl: ENST00000418848 (view in UCSC) ,

LncBook: HSALNT0285335,

LNCipedia: AMMECR1-IT1:1,

NONCODE: NONHSAT138169.2,

URS00009ACFB5_9606 lncRNA 561 2

LncBook: HSALNT0285336,

NONCODE: NONHSAT223506.1,

AMMECR1-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for AMMECR1-IT1 Gene

1 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for AMMECR1-IT1 Gene

No ASD Table

Relevant External Links for AMMECR1-IT1 Gene

GeneLoc Exon Structure for
AMMECR1-IT1

Expression for AMMECR1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for AMMECR1-IT1 Gene

genes like me logo Genes that share expression patterns with AMMECR1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for AMMECR1-IT1 Gene

Orthologs for AMMECR1-IT1 Gene

Evolution for AMMECR1-IT1 Gene

ENSEMBL:
Gene Tree for AMMECR1-IT1 (if available)
TreeFam:
Gene Tree for AMMECR1-IT1 (if available)

No data available for Orthologs for AMMECR1-IT1 Gene

Paralogs for AMMECR1-IT1 Gene

No data available for Paralogs for AMMECR1-IT1 Gene

Variants for AMMECR1-IT1 Gene

Additional Variant Information for AMMECR1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
AMMECR1-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for AMMECR1-IT1 Gene

Disorders for AMMECR1-IT1 Gene

Additional Disease Information for AMMECR1-IT1

No disorders were found for AMMECR1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for AMMECR1-IT1 Gene

Publications for AMMECR1-IT1 Gene

No publications were found for AMMECR1-IT1 Gene.

No data available for Mastermind for AMMECR1-IT1 Gene

Products for AMMECR1-IT1 Gene

Sources for AMMECR1-IT1 Gene