Aliases for ALOX15P1 Gene

Aliases for ALOX15P1 Gene

  • Arachidonate 15-Lipoxygenase Pseudogene 1 2 3 5
  • Arachidonate 15-Lipoxygenase Pseudogene 2
  • ALOX15P 3

External Ids for ALOX15P1 Gene

Previous HGNC Symbols for ALOX15P1 Gene

  • ALOX15P

Previous GeneCards Identifiers for ALOX15P1 Gene

  • GC17P006560
  • GC17U901726
  • GC17P006565

Summaries for ALOX15P1 Gene

GeneCards Summary for ALOX15P1 Gene

ALOX15P1 (Arachidonate 15-Lipoxygenase Pseudogene 1) is a Pseudogene.

Additional gene information for ALOX15P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ALOX15P1 Gene

Genomics for ALOX15P1 Gene

GeneHancer (GH) Regulatory Elements for ALOX15P1 Gene

Promoters and enhancers for ALOX15P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J006654 Promoter/Enhancer 1.1 Ensembl ENCODE dbSUPER 750.6 -0.9 -933 3.8 POLR2A PRDM1 CREM ZIC2 RFX1 LARP7 CTCF SP2 ZBTB20 EZH2 ENSG00000261996 ALOX15P1 MIR4520-1 MIR4520-2 lnc-TXNDC17-1 KIAA0753 TNK1 C17orf100
GH17J006661 Promoter/Enhancer 1 Ensembl dbSUPER 0.6 +4.3 4267 0.6 ETV6 MLLT1 CREM IKZF1 TRIM22 IKZF2 LARP7 CBFB EED DPF2 ENSG00000261996 ALOX15P1 lnc-TXNDC17-1 piR-32214-272 C17orf100
GH17J006660 Promoter/Enhancer 0.9 Ensembl dbSUPER 0.6 +3.7 3667 0.2 CREM IKZF1 TRIM22 CBFB DPF2 ELF1 RUNX3 BMI1 BATF ATF7 ALOX15P1 lnc-TXNDC17-1 piR-32214-272 C17orf100
GH17J006666 Enhancer 0.9 Ensembl ENCODE 0.4 +9.3 9266 1 CTCF MIXL1 RAD21 ELF3 REST TRIM22 GATAD2A RXRB ZNF143 POLR2A ENSG00000261996 KIAA0753 TXNDC17 SLC13A5 MIR195 PITPNM3 BCL6B piR-32214-272 ALOX15P1 lnc-TXNDC17-1
GH17J006659 Promoter/Enhancer 0.5 Ensembl dbSUPER 0.6 +2.6 2567 0.4 ENSG00000261996 ALOX15P1 lnc-TXNDC17-1 piR-32214-272 C17orf100
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ALOX15P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ALOX15P1 Gene

Genomic Locations for ALOX15P1 Gene
chr17:6,657,034-6,693,577
(GRCh38/hg38)
Size:
36,544 bases
Orientation:
Plus strand
chr17:6,561,038-6,567,528
(GRCh37/hg19)
Size:
6,491 bases
Orientation:
Plus strand

Genomic View for ALOX15P1 Gene

Genes around ALOX15P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ALOX15P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ALOX15P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ALOX15P1 Gene

Proteins for ALOX15P1 Gene

Post-translational modifications for ALOX15P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ALOX15P1 Gene

Domains & Families for ALOX15P1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ALOX15P1 Gene

Function for ALOX15P1 Gene

Phenotypes From GWAS Catalog for ALOX15P1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ALOX15P1 Gene

Localization for ALOX15P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ALOX15P1 Gene

Pathways & Interactions for ALOX15P1 Gene

PathCards logo

SuperPathways for ALOX15P1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ALOX15P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ALOX15P1 Gene

Drugs & Compounds for ALOX15P1 Gene

No Compound Related Data Available

Transcripts for ALOX15P1 Gene

mRNA/cDNA for ALOX15P1 Gene

(2) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for ALOX15P1 Gene

No ASD Table

Relevant External Links for ALOX15P1 Gene

GeneLoc Exon Structure for
ALOX15P1
ECgene alternative splicing isoforms for
ALOX15P1

Expression for ALOX15P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of ALOX15P1 Gene:

ALOX15P1

SOURCE GeneReport for Unigene cluster for ALOX15P1 Gene:

Hs.549540
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ALOX15P1 Gene

Orthologs for ALOX15P1 Gene

Evolution for ALOX15P1 Gene

ENSEMBL:
Gene Tree for ALOX15P1 (if available)
TreeFam:
Gene Tree for ALOX15P1 (if available)

No data available for Orthologs for ALOX15P1 Gene

Paralogs for ALOX15P1 Gene

No data available for Paralogs for ALOX15P1 Gene

Variants for ALOX15P1 Gene

Sequence variations from dbSNP and Humsavar for ALOX15P1 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000142879 -- 6,656,226(+) C/T upstream_transcript_variant
rs1000686716 -- 6,661,603(+) C/T downstream_transcript_variant
rs1000899987 -- 6,661,698(+) T/G downstream_transcript_variant
rs1001501637 -- 6,660,346(+) C/T intron_variant
rs1002619161 -- 6,658,892(+) C/G non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ALOX15P1 Gene

Variant ID Type Subtype PubMed ID
nsv574278 CNV gain 21841781
nsv978354 CNV duplication 23825009

Additional Variant Information for ALOX15P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ALOX15P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ALOX15P1 Gene

Disorders for ALOX15P1 Gene

Additional Disease Information for ALOX15P1

No disorders were found for ALOX15P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ALOX15P1 Gene

Publications for ALOX15P1 Gene

  1. A gene cluster encoding human epidermis-type lipoxygenases at chromosome 17p13.1: cloning, physical mapping, and expression. (PMID: 11350124) Krieg P … Fürstenberger G (Genomics 2001) 3 56

Products for ALOX15P1 Gene

Sources for ALOX15P1 Gene