Aliases for ALOX12-AS1 Gene

Subcategory (RNA class) for ALOX12-AS1 Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for ALOX12-AS1 Gene

  • ALOX12 Antisense RNA 1 2 3 5
  • ALOX12-AS1 2 5
  • NONHSAG020671.2 91
  • Lnc-SLC16A11-7 165
  • HSALNG0114226 164

External Ids for ALOX12-AS1 Gene

Summaries for ALOX12-AS1 Gene

GeneCards Summary for ALOX12-AS1 Gene

ALOX12-AS1 (ALOX12 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for ALOX12-AS1 Gene

  • Metazoan signal recognition particle RNA

Additional gene information for ALOX12-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for ALOX12-AS1 Gene

Genomics for ALOX12-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for ALOX12-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ALOX12-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ALOX12-AS1 Gene

Genomic Locations for ALOX12-AS1 Gene
chr17:6,875,232-7,012,530
(GRCh38/hg38)
Size:
137,299 bases
Orientation:
Minus strand
chr17:6,779,954-6,915,668
(GRCh37/hg19)
Size:
135,715 bases
Orientation:
Minus strand

Genomic View for ALOX12-AS1 Gene

Genes around ALOX12-AS1 on UCSC Golden Path with GeneCards custom track
ALOX12-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ALOX12-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ALOX12-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ALOX12-AS1 Gene

Proteins for ALOX12-AS1 Gene

Post-translational modifications for ALOX12-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ALOX12-AS1 Gene

Domains & Families for ALOX12-AS1 Gene

Gene Families for ALOX12-AS1 Gene

genes like me logo Genes that share domains with ALOX12-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ALOX12-AS1 Gene

Function for ALOX12-AS1 Gene

Phenotypes From GWAS Catalog for ALOX12-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ALOX12-AS1 Gene

Localization for ALOX12-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ALOX12-AS1 Gene

Pathways & Interactions for ALOX12-AS1 Gene

PathCards logo

SuperPathways for ALOX12-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ALOX12-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ALOX12-AS1 Gene

Drugs & Compounds for ALOX12-AS1 Gene

No Compound Related Data Available

Transcripts for ALOX12-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ALOX12-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007DBED9_9606 lncRNA 1730 4

Ensembl: ENST00000399540 (view in UCSC) ,

LncBook: HSALNT0236624,

LNCipedia: lnc-SLC16A11-7:14,

NONCODE: NONHSAT175892.1,

URS00007E184C_9606 lncRNA 886 4

Ensembl: ENST00000574377 (view in UCSC) ,

LncBook: HSALNT0236622,

LNCipedia: lnc-SLC16A11-7:22,

NONCODE: NONHSAT175889.1,

URS00007C9A6E_9606 lncRNA 665 4

Ensembl: ENST00000399541 (view in UCSC) ,

LncBook: HSALNT0236619,

LNCipedia: lnc-SLC16A11-7:20,

NONCODE: NONHSAT175888.1,

URS00007C550D_9606 lncRNA 576 4

Ensembl: ENST00000572385 (view in UCSC) ,

LncBook: HSALNT0236597,

LNCipedia: lnc-SLC16A11-7:21,

NONCODE: NONHSAT175883.1,

URS00007DCAEB_9606 lncRNA 567 4

Ensembl: ENST00000570562 (view in UCSC) ,

LncBook: HSALNT0236598,

LNCipedia: lnc-SLC16A11-7:16,

NONCODE: NONHSAT175884.1,

ALOX12-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ALOX12-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for ALOX12-AS1 Gene

No ASD Table

Relevant External Links for ALOX12-AS1 Gene

GeneLoc Exon Structure for
ALOX12-AS1

Expression for ALOX12-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ALOX12-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ALOX12-AS1

genes like me logo Genes that share expression patterns with ALOX12-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ALOX12-AS1 Gene

Orthologs for ALOX12-AS1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for ALOX12-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia -- 31
  • 57 (a)
OneToOne
Species where no ortholog for ALOX12-AS1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for ALOX12-AS1 Gene

ENSEMBL:
Gene Tree for ALOX12-AS1 (if available)
TreeFam:
Gene Tree for ALOX12-AS1 (if available)

Paralogs for ALOX12-AS1 Gene

No data available for Paralogs for ALOX12-AS1 Gene

Variants for ALOX12-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for ALOX12-AS1 Gene

SNP ID Clinical significance and condition Chr 17 pos Variation AA Info Type
714724 Benign: not provided 7,005,898(-) G/A MISSENSE_VARIANT
783067 Likely Benign: not provided 7,005,306(-) G/A MISSENSE_VARIANT
791340 Benign: not provided 6,998,976(-) G/A MISSENSE_VARIANT

Additional dbSNP identifiers (rs#s) for ALOX12-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for ALOX12-AS1 Gene

Variant ID Type Subtype PubMed ID
esv1008363 CNV loss 20482838
esv2422288 CNV deletion 17116639
esv3639855 CNV loss 21293372
nsv457659 CNV loss 19166990
nsv476474 CNV novel sequence insertion 20440878
nsv574322 CNV loss 21841781

Additional Variant Information for ALOX12-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ALOX12-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ALOX12-AS1 Gene

Disorders for ALOX12-AS1 Gene

Additional Disease Information for ALOX12-AS1

No disorders were found for ALOX12-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ALOX12-AS1 Gene

Publications for ALOX12-AS1 Gene

  1. An atlas of genetic influences on human blood metabolites. (PMID: 24816252) Shin SY … Soranzo N (Nature genetics 2014) 3

Products for ALOX12-AS1 Gene

Sources for ALOX12-AS1 Gene