Aliases for ALMS1-IT1 Gene

Subcategory (RNA class) for ALMS1-IT1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for ALMS1-IT1 Gene

  • ALMS1 Intronic Transcript 1 2 3 5
  • ALMS1 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • ALMS1-IT1 2 168
  • HSALNG0015964 167
  • NONHSAG028178 92

External Ids for ALMS1-IT1 Gene

Previous GeneCards Identifiers for ALMS1-IT1 Gene

  • GC00U933249
  • GC02P073685

Summaries for ALMS1-IT1 Gene

GeneCards Summary for ALMS1-IT1 Gene

ALMS1-IT1 (ALMS1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ALMS1-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ALMS1-IT1 Gene

Genomics for ALMS1-IT1 Gene

GeneHancer (GH) Regulatory Elements for ALMS1-IT1 Gene

Promoters and enhancers for ALMS1-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J074438 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 9.8 +985.8 985768 4.4 HNRNPK ZBTB40 CTCF TCF12 POLR2G SP1 NCOR1 PHF8 TEAD4 ZFX RTKN lnc-C2orf81-5 DUSP11 TTC31 ENSG00000273245 PCGF1 CCDC142 WBP1 ENSG00000272183 AUP1
GH02J074196 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 9.8 +744.4 744376 5.6 HNRNPK ZNF217 CTCF SIN3A NRF1 TCF12 MYC POLR2G USF1 SP1 MTHFD2 ENSG00000279070 DUSP11 WBP1 ENSG00000273245 PCGF1 TTC31 CCDC142 INO80B ENSG00000270571
GH02J073892 Promoter/Enhancer 1.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 4.6 +441.4 441369 9.2 EP300 RBM25 BCL11A TCF12 CBFB SRF MAFK ARNT MEF2B NBN ACTG2 STAMBP DGUOK TET3 BOLA3 BOLA3-AS1 TPRKB HTRA2 MOB1A ALMS1-IT1
GH02J073451 Enhancer 0.6 Ensembl 0.7 -3.4 -3432 1.2 ZBTB11 BATF ELF1 IRF4 EBF1 GATA2 JUNB NFIC CBX5 SPI1 lnc-EGR4-2 ALMS1P1 ALMS1 ALMS1-IT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ALMS1-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ALMS1-IT1 Gene

Genomic Locations for ALMS1-IT1 Gene
chr2:73,455,232-73,459,484
(GRCh38/hg38)
Size:
4,253 bases
Orientation:
Plus strand
chr2:73,683,891-73,686,611
(GRCh37/hg19)
Size:
2,721 bases
Orientation:
Plus strand

Genomic View for ALMS1-IT1 Gene

Genes around ALMS1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ALMS1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ALMS1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ALMS1-IT1 Gene

Proteins for ALMS1-IT1 Gene

Post-translational modifications for ALMS1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ALMS1-IT1 Gene

Domains & Families for ALMS1-IT1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ALMS1-IT1 Gene

Function for ALMS1-IT1 Gene

Phenotypes From GWAS Catalog for ALMS1-IT1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ALMS1-IT1 Gene

Localization for ALMS1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ALMS1-IT1 Gene

Pathways & Interactions for ALMS1-IT1 Gene

PathCards logo

SuperPathways for ALMS1-IT1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for ALMS1-IT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ALMS1-IT1 Gene

Drugs & Compounds for ALMS1-IT1 Gene

No Compound Related Data Available

Transcripts for ALMS1-IT1 Gene

mRNA/cDNA for ALMS1-IT1 Gene

6 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
3 LncBook transcripts :
4 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for ALMS1-IT1 Gene

No ASD Table

Relevant External Links for ALMS1-IT1 Gene

GeneLoc Exon Structure for
ALMS1-IT1

Expression for ALMS1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ALMS1-IT1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ALMS1-IT1

genes like me logo Genes that share expression patterns with ALMS1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ALMS1-IT1 Gene

Orthologs for ALMS1-IT1 Gene

Evolution for ALMS1-IT1 Gene

ENSEMBL:
Gene Tree for ALMS1-IT1 (if available)
TreeFam:
Gene Tree for ALMS1-IT1 (if available)

No data available for Orthologs for ALMS1-IT1 Gene

Paralogs for ALMS1-IT1 Gene

No data available for Paralogs for ALMS1-IT1 Gene

Variants for ALMS1-IT1 Gene

Additional dbSNP identifiers (rs#s) for ALMS1-IT1 Gene

Structural Variations from Database of Genomic Variants (DGV) for ALMS1-IT1 Gene

Variant ID Type Subtype PubMed ID
esv3591260 CNV loss 21293372

Additional Variant Information for ALMS1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ALMS1-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for ALMS1-IT1 Gene

Disorders for ALMS1-IT1 Gene

Additional Disease Information for ALMS1-IT1

No disorders were found for ALMS1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ALMS1-IT1 Gene

Publications for ALMS1-IT1 Gene

No publications were found for ALMS1-IT1 Gene.

Products for ALMS1-IT1 Gene

Sources for ALMS1-IT1 Gene