Aliases for ALKBH3-AS1 Gene

Subcategory (RNA class) for ALKBH3-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for ALKBH3-AS1 Gene

  • ALKBH3 Antisense RNA 1 2 3 5
  • ALKBH3-AS1 2 170
  • HSALNG0083844 169
  • NONHSAG008133 94

External Ids for ALKBH3-AS1 Gene

Previous GeneCards Identifiers for ALKBH3-AS1 Gene

  • GC11M043932

Summaries for ALKBH3-AS1 Gene

GeneCards Summary for ALKBH3-AS1 Gene

ALKBH3-AS1 (ALKBH3 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ALKBH3-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ALKBH3-AS1 Gene

Genomics for ALKBH3-AS1 Gene

GeneHancer (GH) Regulatory Elements for ALKBH3-AS1 Gene

Promoters and enhancers for ALKBH3-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ALKBH3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ALKBH3-AS1 Gene

Genomic Locations for ALKBH3-AS1 Gene
chr11:43,908,756-43,920,945
(GRCh38/hg38)
Size:
12,190 bases
Orientation:
Minus strand
chr11:43,930,839-43,942,494
(GRCh37/hg19)
Size:
11,656 bases
Orientation:
Minus strand

Genomic View for ALKBH3-AS1 Gene

Genes around ALKBH3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ALKBH3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ALKBH3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ALKBH3-AS1 Gene

Proteins for ALKBH3-AS1 Gene

Post-translational modifications for ALKBH3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ALKBH3-AS1 Gene

Domains & Families for ALKBH3-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ALKBH3-AS1 Gene

Function for ALKBH3-AS1 Gene

Phenotypes From GWAS Catalog for ALKBH3-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ALKBH3-AS1 Gene

Localization for ALKBH3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ALKBH3-AS1 Gene

Pathways & Interactions for ALKBH3-AS1 Gene

PathCards logo

SuperPathways for ALKBH3-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ALKBH3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ALKBH3-AS1 Gene

Drugs & Compounds for ALKBH3-AS1 Gene

No Compound Related Data Available

Transcripts for ALKBH3-AS1 Gene

mRNA/cDNA for ALKBH3-AS1 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(9) RNACentral transcripts :
(7) LNCipedia transcripts :
(7) LncBook transcripts :
(7) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ALKBH3-AS1 Gene

No ASD Table

Relevant External Links for ALKBH3-AS1 Gene

GeneLoc Exon Structure for
ALKBH3-AS1
ECgene alternative splicing isoforms for
ALKBH3-AS1

Expression for ALKBH3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ALKBH3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ALKBH3-AS1 Gene

This gene is overexpressed in Testis (x17.9).
genes like me logo Genes that share expression patterns with ALKBH3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ALKBH3-AS1 Gene

Orthologs for ALKBH3-AS1 Gene

Evolution for ALKBH3-AS1 Gene

ENSEMBL:
Gene Tree for ALKBH3-AS1 (if available)
TreeFam:
Gene Tree for ALKBH3-AS1 (if available)

No data available for Orthologs for ALKBH3-AS1 Gene

Paralogs for ALKBH3-AS1 Gene

No data available for Paralogs for ALKBH3-AS1 Gene

Variants for ALKBH3-AS1 Gene

Sequence variations from dbSNP and Humsavar for ALKBH3-AS1 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000186486 -- 43,919,366(-) C/G/T intron_variant
rs1000266609 -- 43,916,552(-) G/T intron_variant
rs1000326399 -- 43,909,425(-) C/A/T non_coding_transcript_variant
rs1000564751 -- 43,922,903(-) A/C upstream_transcript_variant
rs1000611439 -- 43,909,633(-) G/C non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ALKBH3-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3434768 CNV insertion 20981092
nsv467867 CNV gain 19166990
nsv554171 CNV gain 21841781
nsv832138 CNV gain 17160897

Additional Variant Information for ALKBH3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ALKBH3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ALKBH3-AS1 Gene

Disorders for ALKBH3-AS1 Gene

Additional Disease Information for ALKBH3-AS1

No disorders were found for ALKBH3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ALKBH3-AS1 Gene

Publications for ALKBH3-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56

Products for ALKBH3-AS1 Gene

Sources for ALKBH3-AS1 Gene