ALKBH3-AS1 Gene (RNA Gene)

ALKBH3 Antisense RNA 1

GC11M043908
GIFtS:
12
See more...

Aliases for ALKBH3-AS1 Gene

Subcategory (RNA class) for ALKBH3-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for ALKBH3-AS1 Gene

  • ALKBH3 Antisense RNA 1 2 3 5
  • ALKBH3-AS1 2 5 165
  • NONHSAG008133.2 91
  • HSALNG0083844 164

External Ids for ALKBH3-AS1 Gene

Previous GeneCards Identifiers for ALKBH3-AS1 Gene

  • GC11M043932

Summaries for ALKBH3-AS1 Gene

GeneCards Summary for ALKBH3-AS1 Gene

ALKBH3-AS1 (ALKBH3 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for ALKBH3-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for ALKBH3-AS1 Gene

Genomics for ALKBH3-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for ALKBH3-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ALKBH3-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for ALKBH3-AS1 Gene

Genomic Locations for ALKBH3-AS1 Gene
chr11:43,908,756-43,920,945
(GRCh38/hg38)
Size:
12,190 bases
Orientation:
Minus strand
chr11:43,930,839-43,942,494
(GRCh37/hg19)
Size:
11,656 bases
Orientation:
Minus strand

Genomic View for ALKBH3-AS1 Gene

Genes around ALKBH3-AS1 on UCSC Golden Path with GeneCards custom track
ALKBH3-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
ALKBH3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ALKBH3-AS1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for ALKBH3-AS1 Gene

Proteins for ALKBH3-AS1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for ALKBH3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ALKBH3-AS1 Gene

Domains & Families for ALKBH3-AS1 Gene

Gene Families for ALKBH3-AS1 Gene

HGNC:
genes like me logo Genes that share domains with ALKBH3-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for ALKBH3-AS1 Gene

Function for ALKBH3-AS1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for ALKBH3-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ALKBH3-AS1 Gene

Localization for ALKBH3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ALKBH3-AS1 Gene

Pathways & Interactions for ALKBH3-AS1 Gene

PathCards logo

SuperPathways for ALKBH3-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for ALKBH3-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for ALKBH3-AS1 Gene

Drugs & Compounds for ALKBH3-AS1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for ALKBH3-AS1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for ALKBH3-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000354FA3_9606 lncRNA 542 4

Ensembl: ENST00000534287 (view in UCSC) ,

LncBook: HSALNT0174596,

LNCipedia: ALKBH3-AS1:7,

NONCODE: NONHSAT018965.2,

URS000016F891_9606 lncRNA 450 4

Ensembl: ENST00000528285 (view in UCSC) ,

LncBook: HSALNT0174595,

LNCipedia: ALKBH3-AS1:1,

NONCODE: NONHSAT018964.2,

URS00003AE6E1_9606 lncRNA 1906 3

Ensembl: ENST00000499194 (view in UCSC) ,

LncBook: HSALNT0174594,

LNCipedia: ALKBH3-AS1:3,

URS000075AA52_9606 lncRNA 1926 2

HGNC: 48670,

RefSeq: NR_038907,

URS0000EEDAF0_9606 lncRNA 2037 1

Ensembl: ENST00000664150 (view in UCSC) ,

ALKBH3-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for ALKBH3-AS1 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for ALKBH3-AS1 Gene

No ASD Table

Relevant External Links for ALKBH3-AS1 Gene

GeneLoc Exon Structure for
ALKBH3-AS1

Expression for ALKBH3-AS1 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ALKBH3-AS1 Gene

mRNA expression in normal human tissues for ALKBH3-AS1 Gene
mRNA expression by GTEx for ALKBH3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ALKBH3-AS1 Gene

This gene is overexpressed in Testis (x17.9).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for ALKBH3-AS1

genes like me logo Genes that share expression patterns with ALKBH3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ALKBH3-AS1 Gene

Orthologs for ALKBH3-AS1 Gene

Evolution for ALKBH3-AS1 Gene

ENSEMBL:
Gene Tree for ALKBH3-AS1 (if available)
TreeFam:
Gene Tree for ALKBH3-AS1 (if available)

No data available for Orthologs for ALKBH3-AS1 Gene

Paralogs for ALKBH3-AS1 Gene

No data available for Paralogs for ALKBH3-AS1 Gene

Variants for ALKBH3-AS1 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for ALKBH3-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for ALKBH3-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3434768 CNV insertion 20981092
nsv467867 CNV gain 19166990
nsv554171 CNV gain 21841781
nsv832138 CNV gain 17160897

Additional Variant Information for ALKBH3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ALKBH3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for ALKBH3-AS1 Gene

Disorders for ALKBH3-AS1 Gene

Additional Disease Information for ALKBH3-AS1

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for ALKBH3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ALKBH3-AS1 Gene

Publications for ALKBH3-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

ExternalLinks

View latest publications for ALKBH3-AS1 gene in Mastermind

Products for ALKBH3-AS1 Gene

Sources for ALKBH3-AS1 Gene