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Aliases for ALKBH3-AS1 Gene

Subcategory (RNA class) for ALKBH3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for ALKBH3-AS1 Gene

  • ALKBH3 Antisense RNA 1 2 3 5

External Ids for ALKBH3-AS1 Gene

Summaries for ALKBH3-AS1 Gene

GeneCards Summary for ALKBH3-AS1 Gene

ALKBH3-AS1 (ALKBH3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ALKBH3-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ALKBH3-AS1 Gene

Genomics for ALKBH3-AS1 Gene

GeneHancer (GH) Regulatory Elements for ALKBH3-AS1 Gene

Promoters and enhancers for ALKBH3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J044065 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 10 -145.5 -145464 2.2 HDGF PKNOX1 SIN3A ZNF2 IRF4 YY1 POLR2B CBX5 E2F8 ZNF207 ACCS EXT2 SEC14L1P1 ALKBH3 TTC17 C11orf96 ALKBH3-AS1 ENSG00000255165 GC11P043987
GH11J043941 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 11.8 -22.6 -22643 4.9 ATF1 SIN3A ZNF48 YY1 GLIS2 ZNF143 FOS RUNX3 RXRA REST C11orf96 SEC14L1P1 ALKBH3 EXT2 ENSG00000254907 TTC17 ACCS ALKBH3-AS1 ENSG00000254409 LOC105376644
GH11J043868 Enhancer 1.2 Ensembl ENCODE 10.6 +51.8 51796 1.5 PKNOX1 SMAD1 ARNT IRF4 YY1 ZNF766 ZNF207 JUNB REST MEF2D ALKBH3-AS1 C11orf96 HSD17B12 MIR129-2 ALKBH3 ENSG00000283375 LOC105376644
GH11J043946 Enhancer 1 ENCODE dbSUPER 11.8 -26.6 -26554 1.3 HDAC1 CTCF USF1 RB1 RAD21 CTBP1 MTA3 DIDO1 ZNF316 POLR2A ENSG00000244953 ENSG00000254409 ALKBH3-AS1 LOC105376644 ALKBH3 ACCSL GC11P043987
GH11J043992 Enhancer 0.9 Ensembl ENCODE dbSUPER 11.5 -72.1 -72117 1.6 IRF2 POLR2A ZNF512 PRDM1 ALKBH3-AS1 ENSG00000254409 GC11P043987 ACCS ACCSL
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around ALKBH3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ALKBH3-AS1 Gene

Genomic Locations for ALKBH3-AS1 Gene
chr11:43,909,289-43,920,944
(GRCh38/hg38)
Size:
11,656 bases
Orientation:
Minus strand
chr11:43,930,839-43,942,494
(GRCh37/hg19)
Size:
11,656 bases
Orientation:
Minus strand

Genomic View for ALKBH3-AS1 Gene

Genes around ALKBH3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ALKBH3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ALKBH3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ALKBH3-AS1 Gene

Proteins for ALKBH3-AS1 Gene

Post-translational modifications for ALKBH3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ALKBH3-AS1 Gene

Domains & Families for ALKBH3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ALKBH3-AS1 Gene

Function for ALKBH3-AS1 Gene

Phenotypes From GWAS Catalog for ALKBH3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ALKBH3-AS1 Gene

Localization for ALKBH3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ALKBH3-AS1 Gene

Pathways & Interactions for ALKBH3-AS1 Gene

SuperPathways for ALKBH3-AS1 Gene

No Data Available

Interacting Proteins for ALKBH3-AS1 Gene

Gene Ontology (GO) - Biological Process for ALKBH3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ALKBH3-AS1 Gene

Drugs & Compounds for ALKBH3-AS1 Gene

No Compound Related Data Available

Transcripts for ALKBH3-AS1 Gene

mRNA/cDNA for ALKBH3-AS1 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(5) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for ALKBH3-AS1 Gene

No ASD Table

Relevant External Links for ALKBH3-AS1 Gene

GeneLoc Exon Structure for
ALKBH3-AS1
ECgene alternative splicing isoforms for
ALKBH3-AS1

Expression for ALKBH3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ALKBH3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ALKBH3-AS1 Gene

This gene is overexpressed in Testis (x17.9).
genes like me logo Genes that share expression patterns with ALKBH3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ALKBH3-AS1 Gene

Orthologs for ALKBH3-AS1 Gene

Evolution for ALKBH3-AS1 Gene

ENSEMBL:
Gene Tree for ALKBH3-AS1 (if available)
TreeFam:
Gene Tree for ALKBH3-AS1 (if available)

No data available for Orthologs for ALKBH3-AS1 Gene

Paralogs for ALKBH3-AS1 Gene

No data available for Paralogs for ALKBH3-AS1 Gene

Variants for ALKBH3-AS1 Gene

Sequence variations from dbSNP and Humsavar for ALKBH3-AS1 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000186486 -- 43,919,366(-) C/G intron_variant
rs1000266609 -- 43,916,552(-) G/T intron_variant
rs1000326399 -- 43,909,425(-) C/A/T non_coding_transcript_variant
rs1000564751 -- 43,922,903(-) A/C upstream_transcript_variant
rs1000611439 -- 43,909,633(-) G/C non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for ALKBH3-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3434768 CNV insertion 20981092
nsv467867 CNV gain 19166990
nsv554171 CNV gain 21841781
nsv832138 CNV gain 17160897

Additional Variant Information for ALKBH3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ALKBH3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ALKBH3-AS1 Gene

Disorders for ALKBH3-AS1 Gene

Additional Disease Information for ALKBH3-AS1

No disorders were found for ALKBH3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ALKBH3-AS1 Gene

Publications for ALKBH3-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for ALKBH3-AS1 Gene

Sources for ALKBH3-AS1 Gene

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